RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 LRIG2O94898 1065 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 KAT7O95251 611 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 ASLP04424 464 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 ATP5BP06576 529 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 RARAP10276 462 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 COMTP21964 271 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 SERPINB6P35237 376 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 OPRD1P41143 372 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 RPS9P46781 194 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 GALK1P51570 392 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 CLCN5P51795 746 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 VCPP55072 806 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 YBEYP58557 167 aaPredicted RBP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 SEMA3BQ13214 749 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 RWDD4Q6NW29 188 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 CARNMT1Q8N4J0 409 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 TERB1Q8NA31 727 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 FAM71BQ8TC56 605 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 PRICKLE1Q96MT3 831 aaPredicted RBP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 ZNF670Q9BS34 389 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 LTB4R2Q9NPC1 389 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 TMEM248Q9NWD8 314 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 ILVBLA1L0T0 632 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 CREB3O43889 395 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 ZFXP17010 805 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 OR1E1P30953 314 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 PLK1P53350 603 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 GEMIN4P57678 1058 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 COPS2P61201 443 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 RPS24P62847 133 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 PPP6R3Q5H9R7 873 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 PEX26Q7Z412 305 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 METTL3Q86U44 580 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 LRRC49Q8IUZ0 686 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 ZNF683Q8IZ20 524 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 KMT2EQ8IZD2 1858 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 HSPH1Q92598 858 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 TRIM44Q96DX7 344 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 RBM41Q96IZ5 413 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 TBC1D17Q9HA65 648 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 PLK2Q9NYY3 685 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 STARD13Q9Y3M8 1113 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 SIT1Q9Y3P8 196 aa18.02■□□□□ 0.48
CLSTN3-210ENST00000540931 COL4A2P08572 1712 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 KRBA1A5PL33 1030 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 PABPC1P11940 636 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 NNMTP40261 264 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 NUBP1P53384 320 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 CDH6P55285 790 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 MRPS21P82921 87 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 PON2Q15165 354 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 GAB4Q2WGN9 574 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 RFX8Q6ZV50 586 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 KIAA0907Q7Z7F0 614 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 RCOR2Q8IZ40 523 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 NAT16Q8N8M0 369 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 RTL3Q8N8U3 475 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 LRRC57Q8N9N7 239 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 KDM1BQ8NB78 822 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 TTC8Q8TAM2 541 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 IGSF8Q969P0 613 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 ACDQ96AP0 544 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 C2orf49Q9BVC5 232 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 MAK16Q9BXY0 300 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 MAGEH1Q9H213 219 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 LZTFL1Q9NQ48 299 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 ANLNQ9NQW6 1124 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 GGA2Q9UJY4 613 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 HPCAL4Q9UM19 191 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 SLC8A2Q9UPR5 921 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 DUSP10Q9Y6W6 482 aa18.01■□□□□ 0.47
CLSTN3-210ENST00000540931 ZSCAN5CA6NGD5 496 aaPredicted RBP18■□□□□ 0.47
CLSTN3-210ENST00000540931 FAM170BA6NMN3 283 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 I6L893 689 aaPredicted RBP18■□□□□ 0.47
CLSTN3-210ENST00000540931 ZRANB2O95218 330 aaKnown RBP eCLIP18■□□□□ 0.47
CLSTN3-210ENST00000540931 RHOCP08134 193 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 CISD3P0C7P0 127 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 POLR2EP19388 210 aaKnown RBP18■□□□□ 0.47
CLSTN3-210ENST00000540931 CTNNA2P26232 953 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 IL1R2P27930 398 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 CTNNA1P35221 906 aaKnown RBP18■□□□□ 0.47
CLSTN3-210ENST00000540931 VASPP50552 380 aaPredicted RBP18■□□□□ 0.47
CLSTN3-210ENST00000540931 NDST2P52849 883 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 SLC20A2Q08357 652 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 UBXN2BQ14CS0 331 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 PARP15Q460N3 678 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 KCNT1Q5JUK3 1230 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 SDE2Q6IQ49 451 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 CYP4V2Q6ZWL3 525 aaPredicted RBP18■□□□□ 0.47
CLSTN3-210ENST00000540931 BZW1Q7L1Q6 419 aaKnown RBP18■□□□□ 0.47
CLSTN3-210ENST00000540931 KATNAL2Q8IYT4 538 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 CFAP52Q8N1V2 620 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 PJA1Q8NG27 643 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 EXD1Q8NHP7 514 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 BHMTQ93088 406 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 PEBP4Q96S96 227 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 KCNF1Q9H3M0 494 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 PLA2G4CQ9UP65 541 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 EFR3BQ9Y2G0 817 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms