RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 COL8A1P27658 744 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 DHX8Q14562 1220 aaKnown RBP9.54□□□□□ -0.88
USP28-205ENST00000537706 ADIPOR2Q86V24 386 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 ZFAND4Q86XD8 727 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 ZNF276Q8N554 614 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 KDM1BQ8NB78 822 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 TMA16Q96EY4 203 aaKnown RBP9.54□□□□□ -0.88
USP28-205ENST00000537706 P2RY11Q96G91 374 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 ACCSQ96QU6 501 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 GFM1Q96RP9 751 aaKnown RBP9.54□□□□□ -0.88
USP28-205ENST00000537706 CGRRF1Q99675 332 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 TM6SF1Q9BZW5 370 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 ST6GALNAC4Q9H4F1 302 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 RUBCNLQ9H714 662 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 PDE11AQ9HCR9 933 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 PRDM8Q9NQV8 689 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 AKAP7Q9P0M2 348 aaPredicted RBP9.54□□□□□ -0.88
USP28-205ENST00000537706 SEL1LQ9UBV2 794 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 NUDT5Q9UKK9 219 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 LOXL2Q9Y4K0 774 aa9.54□□□□□ -0.88
USP28-205ENST00000537706 TP53BP1Q12888 1972 aaPredicted RBP9.54□□□□□ -0.88
USP28-205ENST00000537706 NUMA1Q14980 2115 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 CAPN5O15484 640 aaPredicted RBP9.53□□□□□ -0.88
USP28-205ENST00000537706 KLKB1P03952 638 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 FDPSP14324 419 aaKnown RBP9.53□□□□□ -0.88
USP28-205ENST00000537706 GARTP22102 1010 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 HOXD9P28356 352 aaPredicted RBP9.53□□□□□ -0.88
USP28-205ENST00000537706 PRPHP41219 470 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 UQCRFS1P47985 274 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 FAM46CQ5VWP2 391 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 RNF219Q5W0B1 726 aaPredicted RBP9.53□□□□□ -0.88
USP28-205ENST00000537706 ESRP1Q6NXG1 681 aaKnown RBP9.53□□□□□ -0.88
USP28-205ENST00000537706 SYCP3Q8IZU3 236 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 PLD4Q96BZ4 506 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 HAPLN3Q96S86 360 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 PLIN2Q99541 437 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 CCDC3Q9BQI4 270 aa9.53□□□□□ -0.88
USP28-205ENST00000537706 FOXP1Q9H334 677 aaPredicted RBP9.53□□□□□ -0.88
USP28-205ENST00000537706 PRAMEF33A0A0G2JMD5 474 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 EFCAB7A8K855 629 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 C10orf142B7Z368 130 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 TPP1O14773 563 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 KIAA0391O15091 583 aaKnown RBP9.52□□□□□ -0.88
USP28-205ENST00000537706 PRAMEF10O60809 474 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 CTDNEP1O95476 244 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 IL1BP01584 269 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 PRKCGP05129 697 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 MLLT10P55197 1068 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 MAP3K7CLP57077 242 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 CCDC15Q0P6D6 951 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 EFEMP1Q12805 493 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 TRPC3Q13507 836 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 ANKRD1Q15327 319 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 WDR72Q3MJ13 1102 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 ARSHQ5FYA8 562 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 RSRC2Q7L4I2 434 aaKnown RBP9.52□□□□□ -0.88
USP28-205ENST00000537706 KIAA0907Q7Z7F0 614 aaPredicted RBP9.52□□□□□ -0.88
USP28-205ENST00000537706 ARHGAP18Q8N392 663 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 AADATQ8N5Z0 425 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 C4orf32Q8N8J7 132 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 ZNF548Q8NEK5 533 aaPredicted RBP9.52□□□□□ -0.88
USP28-205ENST00000537706 B3GNT4Q9C0J1 378 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 CASS4Q9NQ75 786 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 CLIC5Q9NZA1 410 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 ARHGAP20Q9P2F6 1191 aa9.52□□□□□ -0.88
USP28-205ENST00000537706 IPO11Q9UI26 975 aaKnown RBP9.52□□□□□ -0.88
USP28-205ENST00000537706 TYW5A2RUC4 315 aaKnown RBP9.52□□□□□ -0.89
USP28-205ENST00000537706 PRR19A6NJB7 356 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 SLC26A4O43511 780 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 PLRG1O43660 514 aaKnown RBP9.52□□□□□ -0.89
USP28-205ENST00000537706 NEBLO76041 1014 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 MOCS3O95396 460 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 FAM200BP0CF97 657 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 NNMTP40261 264 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 WNT7BP56706 349 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 ARID5BQ14865 1188 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 PERM1Q5SV97 790 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 FAM217AQ8IXS0 508 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 IL22RA1Q8N6P7 574 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 APOBEC4Q8WW27 367 aaKnown RBP9.52□□□□□ -0.89
USP28-205ENST00000537706 CALML4Q96GE6 196 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 EPAS1Q99814 870 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 MMTAG2Q9BU76 263 aaKnown RBP9.52□□□□□ -0.89
USP28-205ENST00000537706 MTG2Q9H4K7 406 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 PREBQ9HCU5 417 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 OSER1Q9NX31 292 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 CEP83Q9Y592 693 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 ICE1Q9Y2F5 2266 aa9.52□□□□□ -0.89
USP28-205ENST00000537706 CACNA1DQ01668 2161 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 GOLGA8IPA6NC78 632 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 GOLGA8JA6NMD2 632 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 TTLL8A6PVC2 850 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 STMND1H3BQB6 276 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 AQP9O43315 295 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 SRPRAP08240 638 aaKnown RBP9.51□□□□□ -0.89
USP28-205ENST00000537706 SLFN14P0C7P3 912 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 WT1P19544 449 aaPredicted RBP9.51□□□□□ -0.89
USP28-205ENST00000537706 CCKBRP32239 447 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 PGFP49763 221 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 MAPK10P53779 464 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms