RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 DSEQ9UL01 958 aa13.72□□□□□ -0.21
VPS33B-202ENST00000535906 PTPRDP23468 1912 aa13.72□□□□□ -0.21
VPS33B-202ENST00000535906 SHROOM3Q8TF72 1996 aa13.72□□□□□ -0.21
VPS33B-202ENST00000535906 COL4A4P53420 1690 aaPredicted RBP13.72□□□□□ -0.21
VPS33B-202ENST00000535906 NLRC5Q86WI3 1866 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 ZBTB24O43167 697 aaPredicted RBP13.71□□□□□ -0.21
VPS33B-202ENST00000535906 HNRNPCL1O60812 293 aaKnown RBP13.71□□□□□ -0.21
VPS33B-202ENST00000535906 USP12O75317 370 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 IL1BP01584 269 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 PGFP49763 221 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 CRYMQ14894 314 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 SMAD1Q15797 465 aaKnown RBP13.71□□□□□ -0.21
VPS33B-202ENST00000535906 CTC1Q2NKJ3 1217 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 FAM26DQ5JW98 314 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 PAXIP1Q6ZW49 1069 aaPredicted RBP13.71□□□□□ -0.21
VPS33B-202ENST00000535906 RTN4RL1Q86UN2 441 aaPredicted RBP13.71□□□□□ -0.21
VPS33B-202ENST00000535906 PCSK9Q8NBP7 692 aaKnown RBP13.71□□□□□ -0.21
VPS33B-202ENST00000535906 DQX1Q8TE96 717 aaKnown RBP13.71□□□□□ -0.21
VPS33B-202ENST00000535906 SUSD3Q96L08 255 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 MECRQ9BV79 373 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 TBC1D10AQ9BXI6 508 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 IL1RAPL1Q9NZN1 696 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 RAD54BQ9Y620 910 aa13.71□□□□□ -0.21
VPS33B-202ENST00000535906 NCAM2O15394 837 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 PGAM1P18669 254 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 ELF1P32519 619 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 CD68P34810 354 aaPredicted RBP13.71□□□□□ -0.22
VPS33B-202ENST00000535906 GARSP41250 739 aaKnown RBP13.71□□□□□ -0.22
VPS33B-202ENST00000535906 NIPAL4Q0D2K0 466 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 ZBTB17Q13105 803 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 DCLRE1AQ6PJP8 1040 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 CES3Q6UWW8 571 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 ZNF280BQ86YH2 543 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 SCML4Q8N228 414 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 OR52K1Q8NGK4 314 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 APBB2Q92870 758 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 RNF34Q969K3 372 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 HDAC11Q96DB2 347 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 EPAS1Q99814 870 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 PCMTD2Q9NV79 361 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 NUMBLQ9Y6R0 609 aa13.71□□□□□ -0.22
VPS33B-202ENST00000535906 A0A0G2JND7 137 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 KLF11O14901 512 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 TOP3BO95985 862 aaKnown RBP13.7□□□□□ -0.22
VPS33B-202ENST00000535906 OR4Q2P0C623 313 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 NEFHP12036 1026 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 PTPN4P29074 926 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 SERPINB9P50453 376 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 GALNT2Q10471 571 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 EIF4EBP2Q13542 120 aaPredicted RBP13.7□□□□□ -0.22
VPS33B-202ENST00000535906 MARK2Q7KZI7 788 aaKnown RBP13.7□□□□□ -0.22
VPS33B-202ENST00000535906 NDUFAF2Q8N183 169 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 THEM5Q8N1Q8 247 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 ARMC2Q8NEN0 867 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 NSMCE1Q8WV22 266 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 CELF6Q96J87 481 aaKnown RBP13.7□□□□□ -0.22
VPS33B-202ENST00000535906 UROC1Q96N76 676 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 GEMIN8Q9NWZ8 242 aaKnown RBP13.7□□□□□ -0.22
VPS33B-202ENST00000535906 PSAT1Q9Y617 370 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 CASP8AP2Q9UKL3 1982 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 DDHD2O94830 711 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 IGLV3-25P01717 112 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 SRGAP2BP0DMP2 458 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 SKIP12755 728 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 ARFIP2P53365 341 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 ACLYP53396 1101 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 SLC5A3P53794 718 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 TSPY1Q01534 308 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 LONP2Q86WA8 852 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 CCNJLQ8IV13 435 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 FAM13CQ8NE31 585 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 N4BP2L2Q92802 583 aaPredicted RBP13.7□□□□□ -0.22
VPS33B-202ENST00000535906 SIK2Q9H0K1 926 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 TLE6Q9H808 572 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 MKS1Q9NXB0 559 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 HEY2Q9UBP5 337 aa13.7□□□□□ -0.22
VPS33B-202ENST00000535906 MTO1Q9Y2Z2 717 aaKnown RBP13.7□□□□□ -0.22
VPS33B-202ENST00000535906 THSD7BQ9C0I4 1608 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 DNAJC6O75061 913 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 AP2A1O95782 977 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 CKBP12277 381 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 YWHAHQ04917 246 aaPredicted RBP13.69□□□□□ -0.22
VPS33B-202ENST00000535906 MBTPS1Q14703 1052 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 MAPRE1Q15691 268 aaKnown RBP13.69□□□□□ -0.22
VPS33B-202ENST00000535906 KCTD11Q693B1 232 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 PACS1Q6VY07 963 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 TIFABQ6ZNK6 161 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 ZSCAN18Q8TBC5 510 aaPredicted RBP13.69□□□□□ -0.22
VPS33B-202ENST00000535906 DPF3Q92784 378 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 RSRC1Q96IZ7 334 aaKnown RBP13.69□□□□□ -0.22
VPS33B-202ENST00000535906 FCRL3Q96P31 734 aaPredicted RBP13.69□□□□□ -0.22
VPS33B-202ENST00000535906 TUBB6Q9BUF5 446 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 TRPV6Q9H1D0 765 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 KCNK13Q9HB14 408 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 NEU3Q9UQ49 428 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 TNFRSF10BO14763 440 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 ALDH1A1P00352 501 aa13.69□□□□□ -0.22
VPS33B-202ENST00000535906 ALDOAP04075 364 aaKnown RBP13.69□□□□□ -0.22
VPS33B-202ENST00000535906 DLDP09622 509 aaKnown RBP13.69□□□□□ -0.22
VPS33B-202ENST00000535906 ERVK-10P10266 1014 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms