RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CST6Q15828 149 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 EFHC1Q5JVL4 640 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 TTC39BQ5VTQ0 682 aaPredicted RBP15.23■□□□□ 0.03
VPS28-215ENST00000531924 KIAA0895LQ68EN5 471 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 GJB7Q6PEY0 223 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 PASD1Q8IV76 773 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 MMAAQ8IVH4 418 aaKnown RBP15.23■□□□□ 0.03
VPS28-215ENST00000531924 C1orf216Q8TAB5 229 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 MYEOVQ96EZ4 313 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 PPP1R13BQ96KQ4 1090 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 LMLNQ96KR4 655 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 PPP1R9BQ96SB3 815 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 ACE2Q9BYF1 805 aaPredicted RBP15.23■□□□□ 0.03
VPS28-215ENST00000531924 PDCL3Q9H2J4 239 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 OSGEPQ9NPF4 335 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 ACP6Q9NPH0 428 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 DDIT4Q9NX09 232 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 XPO7Q9UIA9 1087 aaKnown RBP15.23■□□□□ 0.03
VPS28-215ENST00000531924 INTS6Q9UL03 887 aaKnown RBP15.23■□□□□ 0.03
VPS28-215ENST00000531924 SNX11Q9Y5W9 270 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 CACNA1EQ15878 2313 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 GOLGA8CPA6NN73 597 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 TTC34A8MYJ7 566 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 MID1O15344 667 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 HSF2BPO75031 334 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 GLI1P08151 1106 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 SLC8A1P32418 973 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 CTSOP43234 321 aaPredicted RBP15.22■□□□□ 0.03
VPS28-215ENST00000531924 PSMD8P48556 350 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 UBE2HP62256 183 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 BNC1Q01954 994 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 MTA1Q13330 715 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 SLC12A1Q13621 1099 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 TAF5Q15542 800 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 INAVAQ3KP66 663 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 C9orf64Q5T6V5 341 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 ADAMTS14Q8WXS8 1223 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 IGSF8Q969P0 613 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 MRGPRX3Q96LB0 322 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 TMEM121BQ9BXQ6 578 aaPredicted RBP15.22■□□□□ 0.03
VPS28-215ENST00000531924 CYTH4Q9UIA0 394 aa15.22■□□□□ 0.03
VPS28-215ENST00000531924 A0A1W2PP55 124 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 ADH1BP00325 375 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 IL1BP01584 269 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 C7P10643 843 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 PDGFRAP16234 1089 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 CCT8P50990 548 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 GALCP54803 685 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 SULT2A1Q06520 285 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 NME3Q13232 169 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 ARID5BQ14865 1188 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 ACCSLQ4AC99 568 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 OR6B2Q6IFH4 312 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 NCEH1Q6PIU2 408 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 C11orf57Q6ZUT1 292 aaPredicted RBP15.21■□□□□ 0.03
VPS28-215ENST00000531924 DSG4Q86SJ6 1040 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 GLRX5Q86SX6 157 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 FAM114A1Q8IWE2 563 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 APCDD1Q8J025 514 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 DEFB106AQ8N104 65 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 CCAR2Q8N163 923 aaKnown RBP15.21■□□□□ 0.03
VPS28-215ENST00000531924 MLKLQ8NB16 471 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 MYO19Q96H55 970 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 RPL10LQ96L21 214 aaKnown RBP15.21■□□□□ 0.03
VPS28-215ENST00000531924 RPRD1AQ96P16 312 aaPredicted RBP15.21■□□□□ 0.03
VPS28-215ENST00000531924 AASDHPPTQ9NRN7 309 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 SLCO3A1Q9UIG8 710 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 FZD4Q9ULV1 537 aa15.21■□□□□ 0.03
VPS28-215ENST00000531924 CKAP5Q14008 2032 aa15.21■□□□□ 0.02
VPS28-215ENST00000531924 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.2■□□□□ 0.02
VPS28-215ENST00000531924 GTPBP10A4D1E9 387 aaKnown RBP15.2■□□□□ 0.02
VPS28-215ENST00000531924 FAM221BA6H8Z2 402 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 SRRM3A6NNA2 597 aaPredicted RBP15.2■□□□□ 0.02
VPS28-215ENST00000531924 KCNK3O14649 394 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 DFNA5O60443 496 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 CBFA2T3O75081 653 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 GRAP2O75791 330 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 IGLV3-25P01717 112 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 GOT1P17174 413 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 C5AR1P21730 350 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 PON1P27169 355 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 GRK6P43250 576 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 NUMBP49757 651 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 RACK1P63244 317 aaKnown RBP15.2■□□□□ 0.02
VPS28-215ENST00000531924 ZNF177Q13360 481 aaPredicted RBP15.2■□□□□ 0.02
VPS28-215ENST00000531924 CCDC157Q569K6 752 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 LAYNQ6UX15 382 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 SND1Q7KZF4 910 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS28-215ENST00000531924 CIR1Q86X95 450 aaPredicted RBP15.2■□□□□ 0.02
VPS28-215ENST00000531924 STK40Q8N2I9 435 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 OR2T34Q8NGX1 318 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 OR14C36Q8NHC7 312 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 SHC3Q92529 594 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 CPXM1Q96SM3 734 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 NEUROG2Q9H2A3 272 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 ASNSD1Q9NWL6 643 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 SLC25A13Q9UJS0 675 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 SLCO1B1Q9Y6L6 691 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 PCNX2A6NKB5 2137 aa15.2■□□□□ 0.02
VPS28-215ENST00000531924 CHD6Q8TD26 2715 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms