RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ERC1Q8IUD2 1116 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 EGFL6Q8IUX8 553 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 ESX1Q8N693 406 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 USP38Q8NB14 1042 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 PCYOX1LQ8NBM8 494 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 OR8H1Q8NGG4 311 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 SNX21Q969T3 373 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 ZNF503Q96F45 646 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 FBXL20Q96IG2 436 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 HIC2Q96JB3 615 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 Q96MF0 132 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 COG8Q96MW5 612 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 PRR25Q96S07 402 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 AIFM2Q9BRQ8 373 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 MECRQ9BV79 373 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 NRDE2Q9H7Z3 1164 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 NOD2Q9HC29 1040 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 ANKFY1Q9P2R3 1169 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 STRCQ7RTU9 1775 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 MAST3O60307 1309 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 TET3O43151 1660 aa5.18□□□□□ -1.58
CD44-220ENST00000525688 NUP155O75694 1391 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 IQGAP3Q86VI3 1631 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 TSPY2A6NKD2 308 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 M0QZQ0 153 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 CPLX1O14810 134 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 HTATSF1O43719 755 aaKnown RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 FOXD2O60548 495 aaPredicted RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 CYP21A2P08686 494 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 TSPY3P0CV98 308 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 TSPY8P0CW00 308 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 CREB1P16220 341 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 ATF7P17544 494 aaPredicted RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 XBP1P17861 261 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 STAT1P42224 750 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 CLNS1AP54105 237 aaKnown RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 TSPY1Q01534 308 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 TRPC3Q13507 836 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 TUBA3CQ13748 450 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 PTPN14Q15678 1187 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 P3H1Q32P28 736 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 ZNF569Q5MCW4 686 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 LY6G5CQ5SRR4 150 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 CCDC30Q5VVM6 783 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 TUBA3EQ6PEY2 450 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 KCNV1Q6PIU1 500 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 DSTYKQ6XUX3 929 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 PTCHD4Q6ZW05 846 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 PARS2Q7L3T8 475 aaKnown RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 SIRT6Q8N6T7 355 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 PNPLA1Q8N8W4 532 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 PROKR1Q8TCW9 393 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 SLC2A12Q8TD20 617 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 XAGE5Q8WWM1 108 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 REXO5Q96IC2 774 aaKnown RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 FAR2Q96K12 515 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 ASB2Q96Q27 587 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 EIF3CQ99613 913 aaKnown RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 TREX2Q9BQ50 279 aaPredicted RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 DPCDQ9BVM2 203 aaPredicted RBP5.17□□□□□ -1.58
CD44-220ENST00000525688 WDR11Q9BZH6 1224 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 CCDC134Q9H6E4 229 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 CHODLQ9H9P2 273 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 UBN1Q9NPG3 1134 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 VPS45Q9NRW7 570 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 SERTAD4Q9NUC0 356 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 FBXO28Q9NVF7 368 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 NSMCE4AQ9NXX6 385 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 KCND3Q9UK17 655 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 GCC2Q8IWJ2 1684 aa5.17□□□□□ -1.58
CD44-220ENST00000525688 SYNMO15061 1565 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 UGGT1Q9NYU2 1555 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 PTPRTO14522 1441 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 CCDC196A0A1B0GTZ2 297 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 FSD2A1L4K1 749 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 MBD3L5A6NJ08 208 aaPredicted RBP5.16□□□□□ -1.58
CD44-220ENST00000525688 SAC3D1A6NKF1 404 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 C1QTNF3-AMACRE9PGA6 284 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 NKX2-8O15522 239 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 TMPRSS11DO60235 418 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 DKC1O60832 514 aaKnown RBP eCLIP5.16□□□□□ -1.58
CD44-220ENST00000525688 KRT38O76015 456 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 CHRM2P08172 466 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 RXRAP19793 462 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 TGM1P22735 817 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 YY1P25490 414 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 CTGFP29279 349 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 NAP1L1P55209 391 aaKnown RBP5.16□□□□□ -1.58
CD44-220ENST00000525688 TPTEP56180 551 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 RBM6P78332 1123 aaKnown RBP5.16□□□□□ -1.58
CD44-220ENST00000525688 E2F1Q01094 437 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 SLC12A1Q13621 1099 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 IDI1Q13907 227 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 MEA1Q16626 185 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 FAM187BQ17R55 369 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 FBLN7Q53RD9 439 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 PLAC9Q5JTB6 97 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 MIIPQ5JXC2 388 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 MFSD4BQ5TF39 518 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 NUGGCQ68CJ6 796 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms