RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 THOC7Q6I9Y2 204 aaKnown RBP13.42□□□□□ -0.26
TCOF1-213ENST00000514442 DENND1BQ6P3S1 775 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 TTC27Q6P3X3 843 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 CARNMT1Q8N4J0 409 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 KYQ8NBH2 561 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 APOL5Q9BWW9 433 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 THAP1Q9NVV9 213 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 TRNAU1APQ9NX07 287 aaKnown RBP13.42□□□□□ -0.26
TCOF1-213ENST00000514442 NUDT5Q9UKK9 219 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 ALDH2P05091 517 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 CHRM3P20309 590 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 SOX11P35716 441 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 FAM171A1Q5VUB5 890 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 ALYREFQ86V81 257 aaKnown RBP13.42□□□□□ -0.26
TCOF1-213ENST00000514442 GSTCDQ8NEC7 633 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 CDT1Q9H211 546 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 ZDHHC18Q9NUE0 388 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 CD274Q9NZQ7 290 aa13.42□□□□□ -0.26
TCOF1-213ENST00000514442 ADGRA2Q96PE1 1338 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 AMPD1P23109 780 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 SCNN1GP51170 649 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 ARPC4P59998 168 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 ZNF618Q5T7W0 954 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 TFAP2DQ7Z6R9 452 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 DEFB106AQ8N104 65 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 SPOCK2Q92563 424 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 SRPK1Q96SB4 655 aaKnown RBP13.41□□□□□ -0.26
TCOF1-213ENST00000514442 ADAM2Q99965 735 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 RAB15P59190 212 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 ASTE1Q2TB18 679 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-213ENST00000514442 LINC00523Q86TU6 105 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 ZNF555Q8NEP9 628 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 BTBD9Q96Q07 612 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 ADAMTS3O15072 1205 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 GLRA3O75311 464 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 RHOBTB1O94844 696 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 URODP06132 367 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 GEMP55040 296 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 EEF1DP3Q658K8 133 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 FOXR2Q6PJQ5 311 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 CAPSLQ8WWF8 208 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 DLG3Q92796 817 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 ACO2Q99798 780 aaKnown RBP13.41□□□□□ -0.26
TCOF1-213ENST00000514442 SH3GL1Q99961 368 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 FICDQ9BVA6 458 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 FRMD8P1Q9BZ68 369 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-213ENST00000514442 ENTPD7Q9NQZ7 604 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 IARS2Q9NSE4 1012 aaKnown RBP13.41□□□□□ -0.26
TCOF1-213ENST00000514442 SERPINI2O75830 405 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 MIPP30301 263 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 BMPR2Q13873 1038 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 HORMAD1Q86X24 394 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 COLGALT1Q8NBJ5 622 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 MRGBPQ9NV56 204 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 RAB26Q9ULW5 256 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 TMED5Q9Y3A6 229 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 PKP3Q9Y446 797 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 TRIM17Q9Y577 477 aa13.41□□□□□ -0.26
TCOF1-213ENST00000514442 FAM208AQ9UK61 1670 aaKnown RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 SDR42E2A6NKP2 422 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 FOXO6A8MYZ6 492 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 CREB1P16220 341 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 YWHAZP63104 245 aaKnown RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 MYBPC3Q14896 1274 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 SPDYAQ5MJ70 313 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 DQX1Q8TE96 717 aaKnown RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 NT5MQ9NPB1 228 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 SYBUQ9NX95 663 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 COL20A1Q9P218 1284 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 SLC13A4Q9UKG4 626 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 DNPEPQ9ULA0 475 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 HOXA2O43364 376 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 HIST1H2AGP0C0S8 130 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 HIST1H2ADP20671 130 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 BDNFP23560 247 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 S100A5P33763 92 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 MRPS22P82650 360 aaKnown RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 C15orf59Q2T9L4 293 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 HSDL1Q3SXM5 330 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 C10orf82Q8WW14 230 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 TRIM63Q969Q1 353 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 HIST1H2AHQ96KK5 128 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 HIST1H2AJQ99878 128 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 H2AFJQ9BTM1 129 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 FRMD8Q9BZ67 464 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 AAASQ9NRG9 546 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 GRHL1Q9NZI5 618 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 SAE1Q9UBE0 346 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 DNAJB4Q9UDY4 337 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 COQ6Q9Y2Z9 468 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 A0A1B0GVG6 124 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 STX7O15400 261 aaKnown RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 NOL4O94818 638 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 FARP2O94887 1054 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 SSTR1P30872 391 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 GLRBP48167 497 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 MARCKSL1P49006 195 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 DLK2Q6UY11 383 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 RBM15BQ8NDT2 890 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms