RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 TWF2Q6IBS0 349 aaKnown RBP18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 LRRC74BQ6ZQY2 392 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 HFE2Q6ZVN8 426 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 TLK2Q86UE8 772 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 C10orf107Q8IVU9 208 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 DNAAF3Q8N9W5 541 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 ARRDC4Q8NCT1 418 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 ZNF333Q96JL9 665 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 AGAP3Q96P47 875 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 COPG2Q9UBF2 871 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 ZNF212Q9UDV6 495 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 SUFUQ9UMX1 484 aa18.38■□□□□ 0.53
CCHCR1-228ENST00000509552 GABRDO14764 452 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 TBX10O75333 385 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 SMNDC1O75940 238 aaKnown RBP eCLIP18.37■□□□□ 0.537e-7■■□□□ 14.2
CCHCR1-228ENST00000509552 AP2A1O95782 977 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 PTPN3P26045 913 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 ADAM17P78536 824 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 SMAD1Q15797 465 aaKnown RBP18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 ARL13BQ3SXY8 428 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 PPM1JQ5JR12 505 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 PRAMEF19Q5SWL8 479 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 FBXO27Q8NI29 283 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 DTX3LQ8TDB6 740 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 ZNF669Q96BR6 464 aaPredicted RBP18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 PARK7Q99497 189 aaKnown RBP18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 THTPAQ9BU02 230 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 OSBPL1AQ9BXW6 950 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 ULBP1Q9BZM6 244 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 BRD8Q9H0E9 1235 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 DDX43Q9NXZ2 648 aaKnown RBP18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 IL1RAPL1Q9NZN1 696 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 VANGL2Q9ULK5 521 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 PLA2G4CQ9UP65 541 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 GNEQ9Y223 722 aaKnown RBP18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 MTSS1O43312 755 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 RALBP11234 206 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 SERPINB8P50452 374 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 CDK7P50613 346 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 SCAPQ12770 1279 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 FAM110CQ1W6H9 321 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 TP53INP2Q8IXH6 220 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 ULK2Q8IYT8 1036 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 ZNF778Q96MU6 729 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 SNX15Q9NRS6 342 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 TMEM216Q9P0N5 145 aa18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 CORO1CQ9ULV4 474 aaPredicted RBP18.37■□□□□ 0.53
CCHCR1-228ENST00000509552 FAM72CH0Y354 149 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 HCAR3P49019 387 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 FAM72AQ5TYM5 149 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 FAM72DQ6L9T8 149 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 STRA8Q7Z7C7 330 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 FAM72BQ86X60 149 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 ADAM32Q8TC27 787 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 SCG3Q8WXD2 468 aaKnown RBP18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 FCRL3Q96P31 734 aaPredicted RBP18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 RBBP8Q99708 897 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 ANGPTL2Q9UKU9 493 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 SOX13Q9UN79 622 aa18.36■□□□□ 0.53
CCHCR1-228ENST00000509552 ERI2A8K979 691 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 NRP1O14786 923 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 AP1G2O75843 785 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 SKIP12755 728 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 NCAM1P13591 858 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 CPA3P15088 417 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 DAOAP59103 153 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 ABCE1P61221 599 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 PPIDQ08752 370 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 DCLK2Q8N568 766 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 CNGB3Q9NQW8 809 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 DNAJC28Q9NX36 388 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 FBXW11Q9UKB1 542 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 YJEFN3A6XGL0 299 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 C9IYK1 514 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 PTGESO14684 152 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 USP12O75317 370 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 USP1O94782 785 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 FYNP06241 537 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 MYL3P08590 195 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 MYL4P12829 197 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 GJA9P57773 515 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 MRPS35P82673 323 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 TUBB3Q13509 450 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 INTS6LQ5JSJ4 861 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 ITPRIPL1Q6GPH6 555 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 CAPRIN2Q6IMN6 1127 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 ANO7Q6IWH7 933 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 RNF169Q8NCN4 708 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 SREK1Q8WXA9 508 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 SENP8Q96LD8 212 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 PPP1R10Q96QC0 940 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 LBHD1Q9BQE6 289 aaPredicted RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 WDR6Q9NNW5 1121 aaKnown RBP18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 TRHDEQ9UKU6 1024 aa18.35■□□□□ 0.53
CCHCR1-228ENST00000509552 MAGEB16A2A368 324 aa18.34■□□□□ 0.53
CCHCR1-228ENST00000509552 C17orf102A2RUQ5 167 aa18.34■□□□□ 0.53
CCHCR1-228ENST00000509552 PRKCGP05129 697 aa18.34■□□□□ 0.53
CCHCR1-228ENST00000509552 LHX1P48742 406 aa18.34■□□□□ 0.53
CCHCR1-228ENST00000509552 CPT1AP50416 773 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms