RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 RSAD1Q9HA92 442 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 KMT5AQ9NQR1 393 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 ENTPD7Q9NQZ7 604 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 BLOC1S4Q9NUP1 217 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 PRMT7Q9NVM4 692 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 SFMBT1Q9UHJ3 866 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 CDH22Q9UJ99 828 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 BARX2Q9UMQ3 279 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 PRG3Q9Y2Y8 225 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 SRPRBQ9Y5M8 271 aaKnown RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 HS3ST4Q9Y661 456 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 FNDC1Q4ZHG4 1894 aaPredicted RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 ANKRD62A6NC57 917 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 CASTOR2A6NHX0 329 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 TBX10O75333 385 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 TADA2AO75478 443 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 SCAF4O95104 1147 aaKnown RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 GLP2RO95838 553 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 KRT18P05783 430 aaKnown RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 IL9P15248 144 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 GYPEP15421 78 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 NMT1P30419 496 aaKnown RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 FNTBP49356 437 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 NDUFV1P49821 464 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 UBE3AQ05086 875 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 SPAG1Q07617 926 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 SPIDRQ14159 915 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 GIT2Q14161 759 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 SLC39A14Q15043 492 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 PPP2R5AQ15172 486 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 STK38Q15208 465 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 DUSP6Q16828 381 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 FAM187BQ17R55 369 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 LEXMQ3ZCV2 418 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 ZC2HC1CQ53FD0 456 aaPredicted RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 ATF7IP2Q5U623 682 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 C1QL3Q5VWW1 255 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 RRAGBQ5VZM2 374 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 FAM43BQ6ZT52 329 aaPredicted RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 DDX53Q86TM3 631 aaKnown RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 COLGALT2Q8IYK4 626 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 EFHBQ8N7U6 833 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 PDILTQ8N807 584 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 TMEM161BQ8NDZ6 487 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 CNNM3Q8NE01 707 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 SLC7A14Q8TBB6 771 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 HASPINQ8TF76 798 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 NTN5Q8WTR8 489 aaPredicted RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 RAD54LQ92698 747 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 C18orf25Q96B23 403 aaPredicted RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 CCDC51Q96ER9 411 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 AK8Q96MA6 479 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 REEP2Q9BRK0 252 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 NTPCRQ9BSD7 190 aaKnown RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 MRPL9Q9BYD2 267 aaKnown RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 ZSCAN16Q9H4T2 348 aaPredicted RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 UBN1Q9NPG3 1134 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 POLR3BQ9NW08 1133 aaPredicted RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 TBC1D7Q9P0N9 293 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 NDOR1Q9UHB4 597 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 TMA7Q9Y2S6 64 aaKnown RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 MRPS23Q9Y3D9 190 aaKnown RBP4.94□□□□□ -1.62
NUP54-206ENST00000508465 CNTNAP2Q9UHC6 1331 aa4.94□□□□□ -1.62
NUP54-206ENST00000508465 COL4A4P53420 1690 aaPredicted RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 BDP1A6H8Y1 2624 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 MYMKA6NI61 221 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 TISP43B9A030 160 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 ANKRD63C9JTQ0 380 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 I3L4J1 428 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 PTGESO14684 152 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 TRIM24O15164 1050 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 SPTLC2O15270 562 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 NCK2O43639 380 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 RASGRP1O95267 797 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 BMP15O95972 392 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 PRLP01236 227 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 THP07101 528 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 CNPP09543 421 aaKnown RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 EPCAMP16422 314 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 ZNF37AP17032 561 aaPredicted RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 RPL17P18621 184 aaKnown RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 HK1P19367 917 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 SP100P23497 879 aaPredicted RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 KLRC2P26717 231 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 PPM1AP35813 382 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 MATR3P43243 847 aaKnown RBP eCLIP4.93□□□□□ -1.62
NUP54-206ENST00000508465 KIR2DL3P43628 341 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 DSC1Q08554 894 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 STRN3Q13033 797 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 DMP1Q13316 513 aaPredicted RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 SMC1AQ14683 1233 aaKnown RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 PCBP1Q15365 356 aaKnown RBP eCLIP4.93□□□□□ -1.62
NUP54-206ENST00000508465 ZC3H12BQ5HYM0 836 aaKnown RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 GLRA4Q5JXX5 417 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 ZBTB41Q5SVQ8 909 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 SLFN12LQ6IEE8 588 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 FSTL4Q6MZW2 842 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 HAUS6Q7Z4H7 955 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 NLRC5Q86WI3 1866 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms