RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 WDR46O15213 610 aaKnown RBP17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 CFLARO15519 480 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 C8BP07358 591 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 GMPRP36959 345 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 RFTN1Q14699 578 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 MTERF2Q49AM1 385 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 IL23RQ5VWK5 629 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 TRNP1Q6NT89 227 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 DEPTORQ8TB45 409 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 PRMT6Q96LA8 375 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 WRNIP1Q96S55 665 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 ADPGKQ9BRR6 497 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 XYLT2Q9H1B5 865 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 CAAP1Q9H8G2 361 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 PRPSAP2O60256 369 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 SERPINB7O75635 380 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 ZNF189O75820 626 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 PSAPP07602 524 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 GPD1P21695 349 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 TYK2P29597 1187 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 MLH1P40692 756 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 RELAQ04206 551 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 SEMA5AQ13591 1074 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 ANKDD1AQ495B1 522 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 RSBN1LQ6PCB5 846 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 GPR180Q86V85 440 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 CPXCR1Q8N123 301 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 PGBD4Q96DM1 585 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 RMND5BQ96G75 393 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 ZNF341Q9BYN7 854 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 PORCNQ9H237 461 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 CDH7Q9ULB5 785 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 GOLGA8QA0A0J9YX86 632 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 GOLGA8OA6NCC3 632 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 C2CD4BA6NLJ0 364 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 GOLGA8NF8WBI6 632 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 G3V2L1 256 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 STX16-NPEPL1H3BU86 382 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 MATN2O00339 956 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 ENO3P13929 434 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 ZFXP17010 805 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 FUT4P22083 530 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 ADSLP30566 484 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 ATXN3P54252 364 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 OXCT1P55809 520 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 HERC3Q15034 1050 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 ZNF699Q32M78 642 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 LSM12Q3MHD2 195 aaKnown RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 FAM102AQ5T9C2 384 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 ITPRIPL1Q6GPH6 555 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 CDKL3Q8IVW4 592 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 TNS4Q8IZW8 715 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 ISOC1Q96CN7 298 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 COX4I2Q96KJ9 171 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 WDR55Q9H6Y2 383 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 TADA2AO75478 443 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 PPARGP37231 505 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 MAGEA12P43365 314 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 TRPC3Q13507 836 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 TGFBIQ15582 683 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 DUOXA2Q1HG44 320 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 C15orf59Q2T9L4 293 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 RWDD4Q6NW29 188 aaKnown RBP17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 TMEM79Q9BSE2 394 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 EBF1Q9UH73 591 aa17.48■□□□□ 0.39
SQSTM1-211ENST00000506690 KIAA1217Q5T5P2 1943 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 DOCK5Q9H7D0 1870 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 TRIM64CA6NLI5 447 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 DGKIO75912 1065 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 AMHP03971 560 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 ALDH2P05091 517 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 MLNP12872 115 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 KCNA2P16389 499 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 NELFEP18615 380 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 CTBSQ01459 385 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 MAMDC4Q6UXC1 1216 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 PLD6Q8N2A8 252 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 RXFP2Q8WXD0 754 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 ATP6V1E2Q96A05 226 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 ISL2Q96A47 359 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 VPS33BQ9H267 617 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 CLK4Q9HAZ1 481 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 SLC8A2Q9UPR5 921 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 FAM155AB1AL88 458 aaPredicted RBP17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 P4HA1P13674 534 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 ARL2P36404 184 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 CRADDP78560 199 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 ARHGEF16Q5VV41 709 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 KRT80Q6KB66 452 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 CASC4Q6P4E1 433 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 FIBCD1Q8N539 461 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 DQX1Q8TE96 717 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 GPRASP2Q96D09 838 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 ANKRD60Q9BZ19 345 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 EFCAB1Q9HAE3 211 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 RAVER2Q9HCJ3 691 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 SNX15Q9NRS6 342 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 TBC1D23Q9NUY8 699 aa17.47■□□□□ 0.39
SQSTM1-211ENST00000506690 SLC38A7Q9NVC3 462 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms