RNA–Protein interactions for RNA: ENST00000504807.5

DDX41-204, Transcript of DEAD-box helicase 41, human

TSL 2

Gene DDX41, Length 794 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-204	ENST00000504807	USP8	P40818	1118 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	CSK	P41240	450 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	RPS14	P62263	151 aa	Known RBP	13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	SRSF1	Q07955	248 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	STARD3	Q14849	445 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	MEA1	Q16626	185 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	EXOC3L4	Q17RC7	722 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	FNDC3B	Q53EP0	1204 aa	Known RBP	13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	MPP7	Q5T2T1	576 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	NUGGC	Q68CJ6	796 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	FAM183BP	Q6ZVS7	135 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	APCDD1	Q8J025	514 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	DEFB106A	Q8N104	65 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	AHI1	Q8N157	1196 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	SETD7	Q8WTS6	366 aa	Known RBP	13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	UCMA	Q8WVF2	138 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	AZIN2	Q96A70	460 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	TTC17	Q96AE7	1141 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	SLC2A13	Q96QE2	648 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	C6orf106	Q9H6K1	298 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	SAMSN1	Q9NSI8	373 aa	Known RBP	13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	DNAJC12	Q9UKB3	198 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	PI4KA	P42356	2102 aa		13.61	□□□□□ -0.23
DDX41-204	ENST00000504807	SYNCRIP	O60506	623 aa	Known RBP	13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	CBFA2T3	O75081	653 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	NDUFS2	O75306	463 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	TRUB2	O95900	331 aa	Known RBP	13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	DLD	P09622	509 aa	Known RBP	13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	TACR2	P21452	398 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	SLC11A2	P49281	568 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	CAMK2B	Q13554	666 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	PTPN20	Q4JDL3	420 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	DCAF12L1	Q5VU92	463 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	TRNP1	Q6NT89	227 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	PCSK4	Q6UW60	755 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	OLFML1	Q6UWY5	402 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	LAYN	Q6UX15	382 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	GBP6	Q6ZN66	633 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	BEND5	Q7L4P6	421 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	RABEPK	Q7Z6M1	372 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	GLRX5	Q86SX6	157 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	MFN1	Q8IWA4	741 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	UNC45B	Q8IWX7	931 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	LGI2	Q8N0V4	545 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	CARNMT1	Q8N4J0	409 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	ZCCHC9	Q8N567	271 aa	Known RBP	13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	MLKL	Q8NB16	471 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	OR2T3	Q8NH03	318 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	FIBIN	Q8TAL6	211 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	WFIKKN2	Q8TEU8	576 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	DNASE2B	Q8WZ79	361 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	PRCC	Q92733	491 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	SERPINB11	Q96P15	392 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	ORAI3	Q9BRQ5	295 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	POPDC2	Q9HBU9	364 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	PCOLCE2	Q9UKZ9	415 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	PCDHGC3	Q9UN70	934 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	FHOD1	Q9Y613	1164 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	NUMA1	Q14980	2115 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	COL12A1	Q99715	3063 aa		13.6	□□□□□ -0.23
DDX41-204	ENST00000504807	GTPBP10	A4D1E9	387 aa	Known RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	METTL12	A8MUP2	240 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	TTC34	A8MYJ7	566 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	KCNU1	A8MYU2	1149 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	NPC1	O15118	1278 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	TIMM44	O43615	452 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	SIN3B	O75182	1162 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	ATXN1L	P0C7T5	689 aa	Known RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	VAV1	P15498	845 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	MZF1	P28698	734 aa	Predicted RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	ACADSB	P45954	432 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	MTIF2	P46199	727 aa	Known RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	STK19	P49842	368 aa	Predicted RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	KLK7	P49862	253 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	METAP1	P53582	386 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	YWHAZ	P63104	245 aa	Known RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	CENPC	Q03188	943 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	GRIK2	Q13002	908 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	NNT	Q13423	1086 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	MAN2A1	Q16706	1144 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	PLEKHG6	Q3KR16	790 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	C2CD6	Q53TS8	623 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	PITRM1	Q5JRX3	1037 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	KCNT1	Q5JUK3	1230 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	CXorf57	Q6NSI4	855 aa	Known RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	LRRC69	Q6ZNQ3	347 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	ENOSF1	Q7L5Y1	443 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	C14orf80	Q86SX3	495 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	RGL4	Q8IZJ4	473 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	FAM181A	Q8N9Y4	354 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	HJURP	Q8NCD3	748 aa	Predicted RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	IGSF8	Q969P0	613 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	NAA15	Q9BXJ9	866 aa	Known RBP	13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	LHX5	Q9H2C1	402 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	NDST4	Q9H3R1	872 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	THAP9	Q9H5L6	903 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	TMPRSS4	Q9NRS4	437 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	LMBRD1	Q9NUN5	540 aa		13.59	□□□□□ -0.23
DDX41-204	ENST00000504807	SLCO3A1	Q9UIG8	710 aa		13.59	□□□□□ -0.23

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