RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SLC6A4P31645 630 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 ADRA1BP35368 520 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 GJC1P36383 396 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 GGCXP38435 758 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 AIF1P55008 147 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 PRKCQQ04759 706 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 GAD2Q05329 585 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 IFI16Q16666 785 aaKnown RBP10.36□□□□□ -0.75
NUP54-203ENST00000504173 HADHQ16836 314 aaKnown RBP10.36□□□□□ -0.75
NUP54-203ENST00000504173 ANO4Q32M45 955 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 FAM133BQ5BKY9 247 aaKnown RBP10.36□□□□□ -0.75
NUP54-203ENST00000504173 MS4A13Q5J8X5 152 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 LY6G5CQ5SRR4 150 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 RFWD3Q6PCD5 774 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 MAMSTRQ6ZN01 415 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 CPNE8Q86YQ8 564 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 ADGRG2Q8IZP9 1017 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 LGI2Q8N0V4 545 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 BHMTQ93088 406 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 HAPLN3Q96S86 360 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 BBS2Q9BXC9 721 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 TRPV5Q9NQA5 729 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 SPHK2Q9NRA0 654 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 SALL4Q9UJQ4 1053 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 SNX10Q9Y5X0 201 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 HS3ST4Q9Y661 456 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 DUSP10Q9Y6W6 482 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 LAMA5O15230 3695 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 HECTD1Q9ULT8 2610 aa10.36□□□□□ -0.75
NUP54-203ENST00000504173 TICRRQ7Z2Z1 1910 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 OTOL1A6NHN0 477 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 NEDD8-MDP1E9PL57 170 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 I6L893 689 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 SPOPO43791 374 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 BUB1BO60566 1050 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 SLC1A1P43005 524 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 AMPD2Q01433 879 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 SCAPQ12770 1279 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 AUHQ13825 339 aaKnown RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 LPAL2Q16609 132 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 MPPE1Q53F39 396 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 ACBD5Q5T8D3 534 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 C11orf63Q6NUN7 778 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 FBXL22Q6P050 247 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 RHBDF2Q6PJF5 856 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 TSSK4Q6SA08 328 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 LRRC31Q6UY01 552 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 DAAM2Q86T65 1068 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 PDZD3Q86UT5 571 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 TMEM25Q86YD3 366 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 HJURPQ8NCD3 748 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 TPCN2Q8NHX9 752 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 DDI1Q8WTU0 396 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 TMA16Q96EY4 203 aaKnown RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 C1orf74Q96LT6 269 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 PRICKLE1Q96MT3 831 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 RPRD1AQ96P16 312 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 PEBP4Q96S96 227 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 PRMT1Q99873 361 aaKnown RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 SNRNP25Q9BV90 132 aaKnown RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 IRX2Q9BZI1 471 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 DHX35Q9H5Z1 703 aaKnown RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 C8orf33Q9H7E9 229 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 ZWILCHQ9H900 591 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 HEBP1Q9NRV9 189 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 GPATCH2LQ9NWQ4 482 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 MARK1Q9P0L2 795 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 VANGL2Q9ULK5 521 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 FZD10Q9ULW2 581 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 GUCA1BQ9UMX6 200 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 AP4E1Q9UPM8 1137 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 MTF2Q9Y483 593 aaPredicted RBP10.35□□□□□ -0.75
NUP54-203ENST00000504173 HYOU1Q9Y4L1 999 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 PIAS3Q9Y6X2 628 aa10.35□□□□□ -0.75
NUP54-203ENST00000504173 FAM170BA6NMN3 283 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 HOXC11O43248 304 aaPredicted RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 ZSCAN12O43309 604 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 TBL1XO60907 577 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 SRGAP2O75044 1071 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 MOCS3O95396 460 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 TNNT1P13805 278 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 TYRP14679 529 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 TCF4P15884 667 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 COMTP21964 271 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 IL1R2P27930 398 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 GJA4P35212 333 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 SOX9P48436 509 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 SGSHP51688 502 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 MLLT6P55198 1093 aaPredicted RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 TAS2R40P59535 323 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 RPS24P62847 133 aaKnown RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 SLC25A11Q02978 314 aaKnown RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 MLF2Q15773 248 aaPredicted RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 SMTNL2Q2TAL5 461 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 AASDHQ4L235 1098 aaPredicted RBP10.34□□□□□ -0.75
NUP54-203ENST00000504173 SLC44A4Q53GD3 710 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 BOLA3Q53S33 107 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 KCNT1Q5JUK3 1230 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 RABGAP1LQ5R372 815 aa10.34□□□□□ -0.75
NUP54-203ENST00000504173 ZFYVE27Q5T4F4 411 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms