RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TTKP33981 857 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 SERPINB5P36952 375 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 MAGEA10P43363 369 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 PFKPQ01813 784 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 SLC10A2Q12908 348 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 FRG1Q14331 258 aaKnown RBP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 MTERF2Q49AM1 385 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 FAM102AQ5T9C2 384 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 SCARA3Q6AZY7 606 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 MAMDC4Q6UXC1 1216 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 NCCRP1Q6ZVX7 275 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 GPR180Q86V85 440 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 UNC5BQ8IZJ1 945 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 GALNT4Q8N4A0 578 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 PCDH19Q8TAB3 1148 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF420Q8TAQ5 688 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 MAPK15Q8TD08 544 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 FAM151AQ8WW52 585 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 LPAR1Q92633 364 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 BORCS5Q969J3 196 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 CDHR1Q96JP9 859 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 COX4I2Q96KJ9 171 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 QKIQ96PU8 341 aaKnown RBP eCLIP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 OR52B2Q96RD2 323 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 SLC4A5Q9BY07 1137 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 RNPEPQ9H4A4 650 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 JPH1Q9HDC5 661 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-230ENST00000495090 PALMDQ9NP74 551 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 OLAHQ9NV23 265 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 VTI1BQ9UEU0 232 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 RAP2CQ9Y3L5 183 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 HEY1Q9Y5J3 304 aa9.9□□□□□ -0.82
SYNE1-230ENST00000495090 A0A087WXM4 84 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 WDR27A2RRH5 827 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 C7orf72A4D263 438 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 TRIM64A6NGJ6 449 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 G3V2L1 256 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 ADCY6O43306 1168 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 SUPT3HO75486 399 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 MICAL2O94851 1124 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 MPOP05164 745 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 EDN1P05305 212 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 HSPA1AP0DMV8 641 aaKnown RBP9.9□□□□□ -0.83
SYNE1-230ENST00000495090 HSPA1BP0DMV9 641 aaKnown RBP9.9□□□□□ -0.83
SYNE1-230ENST00000495090 EPHA3P29320 983 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 GPD2P43304 727 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 ENTPD1P49961 510 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 ESRRGP62508 458 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 TRAP1Q12931 704 aaKnown RBP9.9□□□□□ -0.83
SYNE1-230ENST00000495090 ART3Q13508 389 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 PRKG1Q13976 671 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 PDK1Q15118 436 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 CYTH1Q15438 398 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF829Q3KNS6 432 aaPredicted RBP9.9□□□□□ -0.83
SYNE1-230ENST00000495090 ZBED5Q49AG3 693 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 SEL1L3Q68CR1 1132 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 KRT80Q6KB66 452 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 ELMSAN1Q6PJG2 1045 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 GPR141Q7Z602 305 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 CLEC14AQ86T13 490 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 RDH11Q8TC12 318 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 DQX1Q8TE96 717 aaKnown RBP9.9□□□□□ -0.83
SYNE1-230ENST00000495090 RXFP2Q8WXD0 754 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 SLC35B4Q969S0 331 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 RCN3Q96D15 328 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 PRMT6Q96LA8 375 aaPredicted RBP9.9□□□□□ -0.83
SYNE1-230ENST00000495090 DOK1Q99704 481 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 HIPK3Q9H422 1215 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 ZBTB26Q9HCK0 441 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 MAN1C1Q9NR34 630 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 SNX15Q9NRS6 342 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 TXNDC16Q9P2K2 825 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 GTF2IRD1Q9UHL9 959 aa9.9□□□□□ -0.83
SYNE1-230ENST00000495090 KAT6AQ92794 2004 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 THSD7AQ9UPZ6 1657 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 KDM4FA0A1W2PPD8 638 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 HACD1B0YJ81 288 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 OGTO15294 1046 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 B4GALT4O60513 344 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 SUPT20HL2P0C7V6 817 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 P4HA1P13674 534 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 PDGFRAP16234 1089 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 DPP6P42658 865 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 EFNA5P52803 228 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 ACTR2P61160 394 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 RHDQ02161 417 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 GSTM4Q03013 218 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 PTPN11Q06124 597 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-230ENST00000495090 C16orf72Q14CZ0 275 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 LSM12Q3MHD2 195 aaKnown RBP9.89□□□□□ -0.83
SYNE1-230ENST00000495090 SUPT20HL1Q3ZLR7 823 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 PPM1LQ5SGD2 360 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 TRNP1Q6NT89 227 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 ISLR2Q6UXK2 745 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 SCARA5Q6ZMJ2 495 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 TTC30AQ86WT1 665 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 FIBCD1Q8N539 461 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 PACRGLQ8N7B6 248 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 GIPC3Q8TF64 312 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 AFG1LQ8WV93 481 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms