RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 CERS2Q96G23 380 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 TSC22D3Q99576 134 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 SH3GL3Q99963 347 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 SLC13A1Q9BZW2 595 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 IL22Q9GZX6 179 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 VTI1BQ9UEU0 232 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 FZD10Q9ULW2 581 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 PLA2G4CQ9UP65 541 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 PCDHB12Q9Y5F1 795 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 NR2E3Q9Y5X4 410 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 USP3Q9Y6I4 520 aa11.78□□□□□ -0.52
RFC4-214ENST00000494047 NRCAMQ92823 1304 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 SMIM35A0A1B0GVV1 85 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 C9IYK1 514 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 H3BRB1 525 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 TNRC18O15417 2968 aaPredicted RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 PEX1O43933 1283 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 HUS1O60921 280 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 AP2A1O95782 977 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 PGK2P07205 417 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 C6orf222P0C671 652 aaPredicted RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 IBSPP21815 317 aaPredicted RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 WARSP23381 471 aaKnown RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 TYK2P29597 1187 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 HSPA13P48723 471 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 LIMK2P53671 638 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 GJA9P57773 515 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 BTKQ06187 659 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 GRIK3Q13003 919 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 RCN2Q14257 317 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 GRIK4Q16099 956 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 MROH9Q5TGP6 573 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 C9orf57Q5W0N0 161 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 NAPEPLDQ6IQ20 393 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 TRNP1Q6NT89 227 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 C16orf89Q6UX73 402 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 DSTYKQ6XUX3 929 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 RINLQ6ZS11 566 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 EEPD1Q7L9B9 569 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 CATSPER4Q7RTX7 472 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 LIMS2Q7Z4I7 341 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 RASSF3Q86WH2 238 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 MFN1Q8IWA4 741 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 TMEM192Q8IY95 271 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 COLGALT1Q8NBJ5 622 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.77□□□□□ -0.53
RFC4-214ENST00000494047 TTC8Q8TAM2 541 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 RNF139Q8WU17 664 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 DLG3Q92796 817 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 NT5C3BQ969T7 300 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 PGAP3Q96FM1 320 aaPredicted RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 PAWRQ96IZ0 340 aaKnown RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 BTBD9Q96Q07 612 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 RBBP8Q99708 897 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 HNRNPABQ99729 332 aaKnown RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 CENPKQ9BS16 269 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 TUT1Q9H6E5 874 aaKnown RBP11.77□□□□□ -0.53
RFC4-214ENST00000494047 XPNPEP3Q9NQH7 507 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 COPG2Q9UBF2 871 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 ARHGAP26Q9UNA1 814 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 CEP290O15078 2479 aa11.77□□□□□ -0.53
RFC4-214ENST00000494047 FRMPD3Q5JV73 1810 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 ARHGEF37A1IGU5 675 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 RNF103O00237 685 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 CLGNO14967 610 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 TBX10O75333 385 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 PROCP04070 461 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 IQCF3P0C7M6 154 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 RALBP11234 206 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 ANPEPP15144 967 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 GNL1P36915 607 aaPredicted RBP11.76□□□□□ -0.53
RFC4-214ENST00000494047 SULT1E1P49888 294 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 ABCE1P61221 599 aaKnown RBP11.76□□□□□ -0.53
RFC4-214ENST00000494047 IGBP1P78318 339 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 DYNC1I2Q13409 638 aaKnown RBP11.76□□□□□ -0.53
RFC4-214ENST00000494047 HNRNPDQ14103 355 aaKnown RBP11.76□□□□□ -0.53
RFC4-214ENST00000494047 HERC3Q15034 1050 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 XKR4Q5GH76 650 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 N4BP2L1Q5TBK1 243 aaPredicted RBP11.76□□□□□ -0.53
RFC4-214ENST00000494047 TMEM154Q6P9G4 183 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 ACAD11Q709F0 780 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 BNIPLQ7Z465 357 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 ACOT1Q86TX2 421 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 ST13P4Q8IZP2 240 aaPredicted RBP11.76□□□□□ -0.53
RFC4-214ENST00000494047 SIX6OS1Q8N1H7 587 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 TMEM86AQ8N2M4 240 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 KCNV2Q8TDN2 545 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 DPF3Q92784 378 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 KHSRPQ92945 711 aaKnown RBP eCLIP11.76□□□□□ -0.533e-6■■□□□ 13.8
RFC4-214ENST00000494047 CNDP1Q96KN2 507 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 KCTD15Q96SI1 283 aaPredicted RBP11.76□□□□□ -0.53
RFC4-214ENST00000494047 RTKNQ9BST9 563 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 ABHD16BQ9H3Z7 469 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 C11orf49Q9H6J7 331 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 LRRC4Q9HBW1 653 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 ARHGEF4Q9NR80 690 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 SLC38A7Q9NVC3 462 aa11.76□□□□□ -0.53
RFC4-214ENST00000494047 C6orf203Q9P0P8 240 aaPredicted RBP11.76□□□□□ -0.53
RFC4-214ENST00000494047 VPS28Q9UK41 221 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms