RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 USP4Q13107 963 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 ADAM15Q13444 863 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 CTC1Q2NKJ3 1217 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 ARHGAP15Q53QZ3 475 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 SLC45A4Q5BKX6 768 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 ADGRF1Q5T601 910 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 ANKRD54Q6NXT1 300 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 BZW1Q7L1Q6 419 aaKnown RBP13.02□□□□□ -0.33
VPS52-220ENST00000493674 CHSY1Q86X52 802 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 DENND1CQ8IV53 801 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 CDKL3Q8IVW4 592 aaPredicted RBP13.02□□□□□ -0.33
VPS52-220ENST00000493674 UMODL1-AS1Q8N2C9 162 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 CPXM2Q8N436 756 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 EIF1ADQ8N9N8 165 aaKnown RBP13.02□□□□□ -0.33
VPS52-220ENST00000493674 CASKIN2Q8WXE0 1202 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 ANKRD7Q92527 254 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 HDAC11Q96DB2 347 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 ZYG11BQ9C0D3 744 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 RAB17Q9H0T7 212 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 NOL6Q9H6R4 1146 aaKnown RBP13.02□□□□□ -0.33
VPS52-220ENST00000493674 PCDH9Q9HC56 1237 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 SMPD4Q9NXE4 827 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 ZNF148Q9UQR1 794 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 MTCH2Q9Y6C9 303 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 UNC80Q8N2C7 3258 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 F5H5T6 163 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 TP73O15350 636 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 NCAM2O15394 837 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 ZNF189O75820 626 aaPredicted RBP13.01□□□□□ -0.33
VPS52-220ENST00000493674 CNTN5O94779 1100 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 IRF1P10914 325 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 VAV1P15498 845 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 HOXB8P17481 243 aaPredicted RBP13.01□□□□□ -0.33
VPS52-220ENST00000493674 ECHS1P30084 290 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 GDF10P55107 478 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 GUCY2DQ02846 1103 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 ZNF33AQ06730 810 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 PPIDQ08752 370 aaKnown RBP13.01□□□□□ -0.33
VPS52-220ENST00000493674 PDK1Q15118 436 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 ZNF77Q15935 545 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 ALFQ53S48 1182 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 RWDD4Q6NW29 188 aaKnown RBP13.01□□□□□ -0.33
VPS52-220ENST00000493674 TMC5Q6UXY8 1006 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 LRRC31Q6UY01 552 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 CHST9Q7L1S5 443 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 DDX42Q86XP3 938 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS52-220ENST00000493674 TP53INP2Q8IXH6 220 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 KIAA1958Q8N8K9 716 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 GLIS1Q8NBF1 620 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 RIN3Q8TB24 985 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 ITFG1Q8TB96 612 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 USP13Q92995 863 aaPredicted RBP13.01□□□□□ -0.33
VPS52-220ENST00000493674 CCDC114Q96M63 670 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 TSGA13Q96PP4 275 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 DDX50Q9BQ39 737 aaKnown RBP13.01□□□□□ -0.33
VPS52-220ENST00000493674 TMEM121Q9BTD3 319 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 BRD8Q9H0E9 1235 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 NDFIP2Q9NV92 336 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 GRHL1Q9NZI5 618 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 MPP6Q9NZW5 540 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 ZNF510Q9Y2H8 683 aa13.01□□□□□ -0.33
VPS52-220ENST00000493674 MUC22E2RYF6 1773 aaPredicted RBP13.01□□□□□ -0.33
VPS52-220ENST00000493674 E2F8A0AVK6 867 aa13□□□□□ -0.33
VPS52-220ENST00000493674 LEFTY2O00292 366 aa13□□□□□ -0.33
VPS52-220ENST00000493674 PPP1R12AO14974 1030 aaPredicted RBP13□□□□□ -0.33
VPS52-220ENST00000493674 MAP3K6O95382 1288 aa13□□□□□ -0.33
VPS52-220ENST00000493674 PRAMEF12O95522 483 aa13□□□□□ -0.33
VPS52-220ENST00000493674 KRT14P02533 472 aa13□□□□□ -0.33
VPS52-220ENST00000493674 MYBL2P10244 700 aa13□□□□□ -0.33
VPS52-220ENST00000493674 IGFBP4P22692 258 aa13□□□□□ -0.33
VPS52-220ENST00000493674 MCM3P25205 808 aa13□□□□□ -0.33
VPS52-220ENST00000493674 STIP1P31948 543 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 GARSP41250 739 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 RPL21P46778 160 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 MAPKAPK2P49137 400 aa13□□□□□ -0.33
VPS52-220ENST00000493674 NDST2P52849 883 aa13□□□□□ -0.33
VPS52-220ENST00000493674 CUL1Q13616 776 aa13□□□□□ -0.33
VPS52-220ENST00000493674 TRADDQ15628 312 aa13□□□□□ -0.33
VPS52-220ENST00000493674 RARS2Q5T160 578 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 TTC39BQ5VTQ0 682 aaPredicted RBP13□□□□□ -0.33
VPS52-220ENST00000493674 RFWD3Q6PCD5 774 aa13□□□□□ -0.33
VPS52-220ENST00000493674 ZC3H18Q86VM9 953 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 IFT20Q8IY31 132 aa13□□□□□ -0.33
VPS52-220ENST00000493674 LGI2Q8N0V4 545 aa13□□□□□ -0.33
VPS52-220ENST00000493674 TFB1MQ8WVM0 346 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 FATE1Q969F0 183 aa13□□□□□ -0.33
VPS52-220ENST00000493674 ZSWIM3Q96MP5 696 aa13□□□□□ -0.33
VPS52-220ENST00000493674 C10orf88Q9H8K7 445 aa13□□□□□ -0.33
VPS52-220ENST00000493674 EPB41L5Q9HCM4 733 aa13□□□□□ -0.33
VPS52-220ENST00000493674 FAM114A2Q9NRY5 505 aa13□□□□□ -0.33
VPS52-220ENST00000493674 DONSONQ9NYP3 566 aa13□□□□□ -0.33
VPS52-220ENST00000493674 CLEC1BQ9P126 229 aa13□□□□□ -0.33
VPS52-220ENST00000493674 CFAP97Q9P2B7 532 aa13□□□□□ -0.33
VPS52-220ENST00000493674 LSM7Q9UK45 103 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 CCL26Q9Y258 94 aa13□□□□□ -0.33
VPS52-220ENST00000493674 UTP11Q9Y3A2 253 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 MRPS23Q9Y3D9 190 aaKnown RBP13□□□□□ -0.33
VPS52-220ENST00000493674 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.99□□□□□ -0.33
VPS52-220ENST00000493674 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.99□□□□□ -0.33
VPS52-220ENST00000493674 ESYT3A0FGR9 886 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms