RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 BMP6P22004 513 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 PPP1R2P41236 205 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 ACADSBP45954 432 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 RACK1P63244 317 aaKnown RBP12.83□□□□□ -0.36
CPSF3-204ENST00000489403 KCNH2Q12809 1159 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 COL28A1Q2UY09 1125 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 RAP1GAP2Q684P5 730 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 DENND1BQ6P3S1 775 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 BEND5Q7L4P6 421 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 MMAAQ8IVH4 418 aaKnown RBP12.83□□□□□ -0.36
CPSF3-204ENST00000489403 APCDD1Q8J025 514 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 GALNT15Q8N3T1 639 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 EHBP1Q8NDI1 1231 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 NELFBQ8WX92 580 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 ACE2Q9BYF1 805 aaPredicted RBP12.83□□□□□ -0.36
CPSF3-204ENST00000489403 ADAMTS1Q9UHI8 967 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 HOOK1Q9UJC3 728 aaKnown RBP12.83□□□□□ -0.36
CPSF3-204ENST00000489403 CNTN6Q9UQ52 1028 aa12.83□□□□□ -0.36
CPSF3-204ENST00000489403 EDDM13A0A1B0GTR0 161 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 TARSL2A2RTX5 802 aaKnown RBP12.82□□□□□ -0.36
CPSF3-204ENST00000489403 PPP1R3GB7ZBB8 358 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 E5RJQ4 531 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 CAPN9O14815 690 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 ABCB7O75027 752 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 MOCS3O95396 460 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 IGLV3-25P01717 112 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 APOEP02649 317 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 TACR2P21452 398 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 SLC8A1P32418 973 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 C21orf59P57076 290 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 PITX1P78337 314 aaPredicted RBP12.82□□□□□ -0.36
CPSF3-204ENST00000489403 ECT2LQ008S8 904 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 CAMK2BQ13554 666 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 FOXR2Q6PJQ5 311 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 CHSY1Q86X52 802 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 CCDC117Q8IWD4 279 aaPredicted RBP12.82□□□□□ -0.36
CPSF3-204ENST00000489403 TRIM59Q8IWR1 403 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 ELOA2Q8IYF1 753 aaPredicted RBP12.82□□□□□ -0.36
CPSF3-204ENST00000489403 LGI2Q8N0V4 545 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 AADATQ8N5Z0 425 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 OR2T34Q8NGX1 318 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 PTPRN2Q92932 1015 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 RPL10LQ96L21 214 aaKnown RBP12.82□□□□□ -0.36
CPSF3-204ENST00000489403 FAM129BQ96TA1 746 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 ELF4Q99607 663 aaPredicted RBP12.82□□□□□ -0.36
CPSF3-204ENST00000489403 OMDQ99983 421 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 SLC4A5Q9BY07 1137 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 INTS2Q9H0H0 1204 aaKnown RBP12.82□□□□□ -0.36
CPSF3-204ENST00000489403 POPDC2Q9HBU9 364 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 DKK4Q9UBT3 224 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 TJP2Q9UDY2 1190 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 CYTH4Q9UIA0 394 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 SLCO3A1Q9UIG8 710 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 FZD4Q9ULV1 537 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 CTNND2Q9UQB3 1225 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 RAXQ9Y2V3 346 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 CABIN1Q9Y6J0 2220 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 NBEAQ8NFP9 2946 aa12.82□□□□□ -0.36
CPSF3-204ENST00000489403 DSPP15924 2871 aaKnown RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 A0A1W2PR77 199 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 FAM149AA5PLN7 773 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 LRRC72A6NJI9 287 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 WNT9AO14904 365 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 DFNA5O60443 496 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 AFPP02771 609 aaKnown RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 KRT5P13647 590 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 PSMD8P48556 350 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 NUMBP49757 651 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 STK19P49842 368 aaPredicted RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 ADPRHP54922 357 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 MARSP56192 900 aaKnown RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 SFSWAPQ12872 951 aaKnown RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 EIF4EBP2Q13542 120 aaPredicted RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 KCNJ12Q14500 433 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 SHBQ15464 509 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 SMAD1Q15797 465 aaKnown RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 MEA1Q16626 185 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 INAVAQ3KP66 663 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 CCDC157Q569K6 752 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 ZC3H12AQ5D1E8 599 aaKnown RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 PRAMEF14Q5SWL7 426 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 DHRS13Q6UX07 377 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 CIR1Q86X95 450 aaPredicted RBP12.81□□□□□ -0.36
CPSF3-204ENST00000489403 GATAD2AQ86YP4 633 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 STK40Q8N2I9 435 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 STK32AQ8WU08 396 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 BTN2A3PQ96KV6 586 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 TRIM62Q9BVG3 475 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 ACP6Q9NPH0 428 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 FTSJ1Q9UET6 329 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 CEP83Q9Y592 693 aa12.81□□□□□ -0.36
CPSF3-204ENST00000489403 KNL1Q8NG31 2342 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 ZFYVE26Q68DK2 2539 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 BICDL2A1A5D9 508 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 TRABD2BA6NFA1 517 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 F5H5T6 163 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 CBX4O00257 560 aa12.8□□□□□ -0.36
CPSF3-204ENST00000489403 LETM1O95202 739 aaPredicted RBP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 TRUB2O95900 331 aaKnown RBP12.8□□□□□ -0.36
CPSF3-204ENST00000489403 ADH1BP00325 375 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms