RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 SPANXN3Q5MJ09 141 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 CES3Q6UWW8 571 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 DCLK2Q8N568 766 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 CCDC185Q8N715 623 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 CERS2Q96G23 380 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 HIC2Q96JB3 615 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 MPP4Q96JB8 637 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 OR52B2Q96RD2 323 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 SERPINI1Q99574 410 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 PDZD7Q9H5P4 517 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 FAM49BQ9NUQ9 324 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 UBAP1Q9NZ09 502 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 RAB26Q9ULW5 256 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 RNF103O00237 685 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 AIM2O14862 343 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 ASLP04424 464 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 TFAP2AP05549 437 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CD1EP15812 388 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 GOT1P17174 413 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 SERPINB8P50452 374 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 TTLL12Q14166 644 aaPredicted RBP12.49□□□□□ -0.41
COL3A1-206ENST00000487010 AMHR2Q16671 573 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CELF3Q5SZQ8 465 aaKnown RBP12.49□□□□□ -0.41
COL3A1-206ENST00000487010 C16orf89Q6UX73 402 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 TMEM126BQ8IUX1 230 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 MICALL2Q8IY33 904 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 TDRD5Q8NAT2 981 aaKnown RBP12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CLEC4CQ8WTT0 213 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CPB2Q96IY4 423 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 RBBP8Q99708 897 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 MRPL45Q9BRJ2 306 aaKnown RBP12.49□□□□□ -0.41
COL3A1-206ENST00000487010 TCF7L2Q9NQB0 619 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PTTG2Q9NZH5 202 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PACSIN3Q9UKS6 424 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 TMCO1Q9UM00 188 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PHF24Q9UPV7 400 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 RPS6KL1Q9Y6S9 549 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 SCN4AP35499 1836 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 RGSL1A5PLK6 1076 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CRTAMO95727 393 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CLPTM1O96005 669 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PIK3R1P27986 724 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PSMB4P28070 264 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 SPRP35270 261 aaPredicted RBP12.49□□□□□ -0.41
COL3A1-206ENST00000487010 SERPINB5P36952 375 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PHKA2P46019 1235 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 NUDT2P50583 147 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CLCN2P51788 898 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 ADGRE1Q14246 886 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CNGA3Q16281 694 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 RARS2Q5T160 578 aaKnown RBP12.49□□□□□ -0.41
COL3A1-206ENST00000487010 RBM44Q6ZP01 1051 aaKnown RBP12.49□□□□□ -0.41
COL3A1-206ENST00000487010 SLC26A9Q7LBE3 791 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PYROXD2Q8N2H3 581 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PGBD4Q96DM1 585 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 P2RY11Q96G91 374 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 CNDP1Q96KN2 507 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 LRGUKQ96M69 825 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 FCRL3Q96P31 734 aaPredicted RBP12.49□□□□□ -0.41
COL3A1-206ENST00000487010 PLK2Q9NYY3 685 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 VPS28Q9UK41 221 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 LZTS1Q9Y250 596 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 A0A0G2JMZ2 1700 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 LRRC37A2A6NM11 1700 aa12.49□□□□□ -0.41
COL3A1-206ENST00000487010 KPNA7A9QM74 516 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 MFSD11O43934 449 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 TRIM13O60858 407 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 H2AFYO75367 372 aaKnown RBP12.48□□□□□ -0.41
COL3A1-206ENST00000487010 MPOP05164 745 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 ARL4AP40617 200 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 GLUD2P49448 558 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 LIMK2P53671 638 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 KYAT1Q16773 422 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 ZNF423Q2M1K9 1284 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 SOWAHAQ2M3V2 549 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 TBC1D25Q3MII6 688 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 ZFP1Q6P2D0 407 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 LBX2Q6XYB7 198 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 CLEC14AQ86T13 490 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 SNX32Q86XE0 403 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 RIOX2Q8IUF8 465 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 DSELQ8IZU8 1212 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 KYQ8NBH2 561 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 CATSPER1Q8NEC5 780 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 SREK1Q8WXA9 508 aaKnown RBP12.48□□□□□ -0.41
COL3A1-206ENST00000487010 FERMT1Q9BQL6 677 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 MRPS26Q9BYN8 205 aaKnown RBP12.48□□□□□ -0.41
COL3A1-206ENST00000487010 CEP41Q9BYV8 373 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 PDGFDQ9GZP0 370 aaPredicted RBP12.48□□□□□ -0.41
COL3A1-206ENST00000487010 NME7Q9Y5B8 376 aa12.48□□□□□ -0.41
COL3A1-206ENST00000487010 GOLGA8QA0A0J9YX86 632 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 GOLGA8OA6NCC3 632 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 GOLGA8NF8WBI6 632 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 HBP1O60381 514 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 RPS12P25398 132 aaKnown RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 GMPSP49915 693 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 MRPS22P82650 360 aaKnown RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 POU5F1BQ06416 359 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms