RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 LATO43561 262 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 LDOC1O95751 146 aaPredicted RBP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 GOT1P17174 413 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 C5AR1P21730 350 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 SLC8A1P32418 973 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 HNF1BP35680 557 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 NUDT1P36639 197 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 VASPP50552 380 aaPredicted RBP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 RPS24P62847 133 aaKnown RBP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 LRRC63Q05C16 580 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 ILKQ13418 452 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 RTP5Q14D33 572 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 DCAF17Q5H9S7 520 aaPredicted RBP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 FSCBQ5H9T9 825 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 ZNF658Q5TYW1 1059 aaPredicted RBP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 TMEM270Q6UE05 265 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 SND1Q7KZF4 910 aaKnown RBP eCLIP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 IQCHQ86VS3 1027 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 SMYD4Q8IYR2 804 aaPredicted RBP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 OXR1Q8N573 874 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 LSM14AQ8ND56 463 aaKnown RBP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 SPATA20Q8TB22 786 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 GANCQ8TET4 914 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 NXPE2Q96DL1 559 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 GSDMAQ96QA5 445 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 TSG101Q99816 390 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 OMDQ99983 421 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 ZSWIM1Q9BR11 485 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 NRSN2Q9GZP1 204 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 KDM4CQ9H3R0 1056 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 GOLPH3LQ9H4A5 285 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 METTL14Q9HCE5 456 aaKnown RBP13.48□□□□□ -0.25
HDAC6-227ENST00000485102 GDF3Q9NR23 364 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 RMND1Q9NWS8 449 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 STIM2Q9P246 746 aa13.48□□□□□ -0.25
HDAC6-227ENST00000485102 BPTFQ12830 3046 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 RNF225M0QZC1 329 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 PLK4O00444 970 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 P4HA2O15460 535 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 RFPL3O75679 317 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 LUC7L3O95232 432 aaKnown RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 MOCS3O95396 460 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ADH1BP00325 375 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ITGAVP06756 1048 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 JUPP14923 745 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ABCB4P21439 1286 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 EIF2S3P41091 472 aaKnown RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ABCG1P45844 678 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 FMO5P49326 533 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ARRB1P49407 418 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ACADVLP49748 655 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 RGS7P49802 495 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ECT2LQ008S8 904 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 OVGP1Q12889 678 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 SLC12A1Q13621 1099 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 CDH18Q13634 790 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ELAVL3Q14576 367 aaKnown RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 MEA1Q16626 185 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 DCAF6Q58WW2 860 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 PITRM1Q5JRX3 1037 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 C6orf118Q5T5N4 469 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 SFMBT2Q5VUG0 894 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 ANKRD40Q6AI12 368 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 FBXL19Q6PCT2 694 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 GATAD2AQ86YP4 633 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 MMAAQ8IVH4 418 aaKnown RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 CCDC117Q8IWD4 279 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 DHX40Q8IX18 779 aaKnown RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 MFSD2AQ8NA29 543 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 LMO3Q8TAP4 145 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 DQX1Q8TE96 717 aaKnown RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 STK32AQ8WU08 396 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 PTPRN2Q92932 1015 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 MYEOVQ96EZ4 313 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 CNDP2Q96KP4 475 aaKnown RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 NT5C1BQ96P26 610 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 UBL7Q96S82 380 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 TRIM62Q9BVG3 475 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 NUCKS1Q9H1E3 243 aaKnown RBP13.47□□□□□ -0.25
HDAC6-227ENST00000485102 SLCO3A1Q9UIG8 710 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 MYLKQ15746 1914 aa13.47□□□□□ -0.25
HDAC6-227ENST00000485102 FAM47DPA6NHR8 397 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 TTC34A8MYJ7 566 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 TLR4O00206 839 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 RNASEH2AO75792 299 aaKnown RBP13.46□□□□□ -0.25
HDAC6-227ENST00000485102 EPHA8P29322 1005 aaPredicted RBP13.46□□□□□ -0.25
HDAC6-227ENST00000485102 GPD2P43304 727 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 PLK1P53350 603 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 PMS1P54277 932 aaKnown RBP13.46□□□□□ -0.25
HDAC6-227ENST00000485102 ADPRHP54922 357 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 NXPH1P58417 271 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 IL9RQ01113 521 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 SULT2A1Q06520 285 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 EIF4EBP2Q13542 120 aaPredicted RBP13.46□□□□□ -0.25
HDAC6-227ENST00000485102 SLC45A4Q5BKX6 768 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 PRAMEF14Q5SWL7 426 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 KANSL1Q7Z3B3 1105 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 AADATQ8N5Z0 425 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 CLEC4CQ8WTT0 213 aa13.46□□□□□ -0.25
HDAC6-227ENST00000485102 RFFLQ8WZ73 363 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms