RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 CCDC89Q8N998 374 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 BBOF1Q8ND07 529 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ITFG1Q8TB96 612 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ZSCAN18Q8TBC5 510 aaPredicted RBP10.45□□□□□ -0.74
USP39-215ENST00000481409 TFB1MQ8WVM0 346 aaKnown RBP10.45□□□□□ -0.74
USP39-215ENST00000481409 FGF13Q92913 245 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 RTP4Q96DX8 246 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ASB16Q96NS5 453 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 TSGA13Q96PP4 275 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 KRT12Q99456 494 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 HERPUD2Q9BSE4 406 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 MAGEH1Q9H213 219 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 TMPRSS4Q9NRS4 437 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 SMPD4Q9NXE4 827 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 DTLQ9NZJ0 730 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 XPO7Q9UIA9 1087 aaKnown RBP10.45□□□□□ -0.74
USP39-215ENST00000481409 CD207Q9UJ71 328 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ZNF148Q9UQR1 794 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 TBC1D30Q9Y2I9 924 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 UTP11Q9Y3A2 253 aaKnown RBP10.45□□□□□ -0.74
USP39-215ENST00000481409 CHD7Q9P2D1 2997 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 MYO9BQ13459 2157 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.44□□□□□ -0.74
USP39-215ENST00000481409 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.44□□□□□ -0.74
USP39-215ENST00000481409 ILVBLA1L0T0 632 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 LINC01565O15544 149 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 TBX10O75333 385 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 IRF1P10914 325 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 CCNCP24863 283 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 OR1E1P30953 314 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 ZXDBP98169 803 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 RBM10P98175 930 aaKnown RBP10.44□□□□□ -0.74
USP39-215ENST00000481409 ADCY2Q08462 1091 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 PPIDQ08752 370 aaKnown RBP10.44□□□□□ -0.74
USP39-215ENST00000481409 ZNF177Q13360 481 aaPredicted RBP10.44□□□□□ -0.74
USP39-215ENST00000481409 ANO4Q32M45 955 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 P3H1Q32P28 736 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 SLC45A4Q5BKX6 768 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 STXBP5Q5T5C0 1151 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 OTOP3Q7RTS5 596 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 ADAT2Q7Z6V5 191 aaKnown RBP10.44□□□□□ -0.74
USP39-215ENST00000481409 KLHL7Q8IXQ5 586 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 ALLCQ8N6M5 410 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 BPIFB1Q8TDL5 484 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 DEPDC1BQ8WUY9 529 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 C1orf54Q8WWF1 131 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 RSAD2Q8WXG1 361 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 SUSD6Q92537 303 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 NXPE3Q969Y0 559 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 TMA16Q96EY4 203 aaKnown RBP10.44□□□□□ -0.74
USP39-215ENST00000481409 PPP1R2P1Q96PQ5 205 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 QKIQ96PU8 341 aaKnown RBP eCLIP10.44□□□□□ -0.74
USP39-215ENST00000481409 SLC2A11Q9BYW1 496 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 DDX47Q9H0S4 455 aaKnown RBP10.44□□□□□ -0.74
USP39-215ENST00000481409 PCDH9Q9HC56 1237 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 ZFP14Q9HCL3 533 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 SMARCAL1Q9NZC9 954 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 MARK1Q9P0L2 795 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 ZNF212Q9UDV6 495 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 AMACRQ9UHK6 382 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 DNPEPQ9ULA0 475 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 NR2E1Q9Y466 385 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 HEY1Q9Y5J3 304 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 DENND4AQ7Z401 1863 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 TRANK1O15050 2925 aa10.44□□□□□ -0.74
USP39-215ENST00000481409 ZSCAN5CA6NGD5 496 aaPredicted RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 H7C0C1 242 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 SOX1O00570 391 aaPredicted RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 MFSD11O43934 449 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 RAMP2O60895 175 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 ECI2O75521 394 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 PECAM1P16284 738 aaPredicted RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 TNFRSF8P28908 595 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 SLC6A4P31645 630 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 LTBRP36941 435 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 GARSP41250 739 aaKnown RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 ATP5OP48047 213 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 CAV1Q03135 178 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 PTK6Q13882 451 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 CBX2Q14781 532 aaPredicted RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 POLD3Q15054 466 aaPredicted RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 PRKD1Q15139 912 aaPredicted RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 PDGFRLQ15198 375 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 PUS10Q3MIT2 529 aaKnown RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 PREPLQ4J6C6 727 aaPredicted RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 TEX35Q5T0J7 233 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 HEATR6Q6AI08 1181 aaKnown RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 WDR93Q6P2C0 686 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 DARS2Q6PI48 645 aaKnown RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 C1orf228Q6PIY5 440 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 GET4Q7L5D6 327 aaPredicted RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 GSTA5Q7RTV2 222 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 PCGF5Q86SE9 256 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 C14orf80Q86SX3 495 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 METTL3Q86U44 580 aaKnown RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 IFT20Q8IY31 132 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 TDRD5Q8NAT2 981 aaKnown RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 NOA1Q8NC60 698 aaKnown RBP10.43□□□□□ -0.74
USP39-215ENST00000481409 OSCP1Q8WVF1 389 aa10.43□□□□□ -0.74
USP39-215ENST00000481409 SEC14L1Q92503 715 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms