RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 LMNB2Q03252 620 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 USP4Q13107 963 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 XRCC4Q13426 336 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 DHX34Q14147 1143 aaKnown RBP18.07■□□□□ 0.48
UPF3A-206ENST00000480362 KCTD19Q17RG1 926 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-206ENST00000480362 FAM78AQ5JUQ0 283 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 DARS2Q6PI48 645 aaKnown RBP18.07■□□□□ 0.48
UPF3A-206ENST00000480362 MAATS1Q7Z4T9 603 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 TFAP2DQ7Z6R9 452 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 CPXM2Q8N436 756 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 LRRN4Q8WUT4 740 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 MYLIPQ8WY64 445 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 CELF6Q96J87 481 aaKnown RBP18.07■□□□□ 0.48
UPF3A-206ENST00000480362 ASB16Q96NS5 453 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 OLFM3Q96PB7 478 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 EPC1Q9H2F5 836 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 KIF9Q9HAQ2 790 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 ZNF212Q9UDV6 495 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 CDH7Q9ULB5 785 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 RAD54BQ9Y620 910 aa18.07■□□□□ 0.48
UPF3A-206ENST00000480362 FAM187AA6NFU0 413 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 ECEL1O95672 775 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 ITGAVP06756 1048 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 VIPR2P41587 438 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 CDH4P55283 916 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 SLC7A5Q01650 507 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 PDK1Q15118 436 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 Q7L0L9 218 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 JAMLQ86YT9 394 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 TDRD5Q8NAT2 981 aaKnown RBP18.06■□□□□ 0.48
UPF3A-206ENST00000480362 GRK7Q8WTQ7 553 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 SMARCD2Q92925 531 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 SLCO2A1Q92959 643 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 TMA16Q96EY4 203 aaKnown RBP18.06■□□□□ 0.48
UPF3A-206ENST00000480362 CDX2Q99626 313 aaPredicted RBP18.06■□□□□ 0.48
UPF3A-206ENST00000480362 TMEM121Q9BTD3 319 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 SLC39A8Q9C0K1 460 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 RETREG1Q9H6L5 497 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 DONSONQ9NYP3 566 aa18.06■□□□□ 0.48
UPF3A-206ENST00000480362 TRANK1O15050 2925 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 NCAM2O15394 837 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 TBL1XO60907 577 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 OR1E1P30953 314 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 MAPKAPK2P49137 400 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 GALNT2Q10471 571 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 CCDC85BQ15834 202 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-206ENST00000480362 SLC45A4Q5BKX6 768 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 TTC39BQ5VTQ0 682 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-206ENST00000480362 AFMIDQ63HM1 303 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 GSTA5Q7RTV2 222 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 CDKL3Q8IVW4 592 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-206ENST00000480362 ARHGAP12Q8IWW6 846 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 UMODL1-AS1Q8N2C9 162 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 ALLCQ8N6M5 410 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 HJURPQ8NCD3 748 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-206ENST00000480362 TFB1MQ8WVM0 346 aaKnown RBP18.05■□□□□ 0.48
UPF3A-206ENST00000480362 RSPRY1Q96DX4 576 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 LRRC3BQ96PB8 259 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 MYADMQ96S97 322 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 HINFPQ9BQA5 517 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 LINC00597Q9H2U6 94 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 TRPV4Q9HBA0 871 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 TBC1D14Q9P2M4 693 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 DMGDHQ9UI17 866 aaKnown RBP18.05■□□□□ 0.48
UPF3A-206ENST00000480362 CD207Q9UJ71 328 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 TRIOBPQ9H2D6 2365 aa18.05■□□□□ 0.48
UPF3A-206ENST00000480362 NUP210Q8TEM1 1887 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-206ENST00000480362 DOCK4Q8N1I0 1966 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 A0A1B0GVM2 712 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 BCLAF3A2AJT9 711 aaKnown RBP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 TYW5A2RUC4 315 aaKnown RBP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 TCAF2A6NFQ2 919 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 HACD1B0YJ81 288 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 SGK1O00141 431 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 DFFAO00273 331 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 PPP1R12AO14974 1030 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 CLDN11O75508 207 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 HEXIM1O94992 359 aaKnown RBP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 GAS8O95995 478 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 MX2P20592 715 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 RBL1P28749 1068 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 GBP2P32456 591 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 NDST2P52849 883 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 ZNF177Q13360 481 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 MPPE1Q53F39 396 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 GPR153Q6NV75 609 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 CHST9Q7L1S5 443 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 SMRP1Q8NCR6 262 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 CCNYQ8ND76 341 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 RSAD2Q8WXG1 361 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 QKIQ96PU8 341 aaKnown RBP eCLIP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 LGMNQ99538 433 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 TRIM51Q9BSJ1 452 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 POMKQ9H5K3 350 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 NOL6Q9H6R4 1146 aaKnown RBP18.04■□□□□ 0.48
UPF3A-206ENST00000480362 ANKZF1Q9H8Y5 726 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 USP29Q9HBJ7 922 aa18.04■□□□□ 0.48
UPF3A-206ENST00000480362 LAMA3Q16787 3333 aa18.03■□□□□ 0.48
UPF3A-206ENST00000480362 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms