RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 PLEKHG6Q3KR16 790 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 TAF3Q5VWG9 929 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ZNF683Q8IZ20 524 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 RGL4Q8IZJ4 473 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 CCAR2Q8N163 923 aaKnown RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ATP6V0D2Q8N8Y2 350 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ZNF557Q8N988 423 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ORAI3Q9BRQ5 295 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 VPS16Q9H269 839 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 NOCTQ9UK39 431 aaKnown RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 HS3ST4Q9Y661 456 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 WDFY3Q8IZQ1 3526 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 H0Y626 953 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 TOP3BO95985 862 aaKnown RBP14.56□□□□□ -0.08
UPF3A-204ENST00000475218 ASLP04424 464 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 MMEP08473 750 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 ACADMP11310 421 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 CCR1P32246 355 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 NOS2P35228 1153 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 NME3Q13232 169 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 AUHQ13825 339 aaKnown RBP14.56□□□□□ -0.08
UPF3A-204ENST00000475218 SYCP2LQ5T4T6 812 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 XYLT1Q86Y38 959 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 DHX40Q8IX18 779 aaKnown RBP14.56□□□□□ -0.08
UPF3A-204ENST00000475218 ZCCHC9Q8N567 271 aaKnown RBP14.56□□□□□ -0.08
UPF3A-204ENST00000475218 KDM1BQ8NB78 822 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 SLC20A1Q8WUM9 679 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 RPL10LQ96L21 214 aaKnown RBP14.56□□□□□ -0.08
UPF3A-204ENST00000475218 STK33Q9BYT3 514 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 HSD3B7Q9H2F3 369 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 TMPRSS4Q9NRS4 437 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 DNAAF2Q9NVR5 837 aaKnown RBP14.56□□□□□ -0.08
UPF3A-204ENST00000475218 FANCLQ9NW38 375 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 KIAA1522Q9P206 1035 aaPredicted RBP14.56□□□□□ -0.08
UPF3A-204ENST00000475218 SIK3Q9Y2K2 1263 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 OR51B4Q9Y5P0 310 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 SNX10Q9Y5X0 201 aa14.56□□□□□ -0.08
UPF3A-204ENST00000475218 UPK3BL1B0FP48 263 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 UPK3BL2E5RIL1 263 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 F5H5T6 163 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 M0QYT0 321 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PAGE1O75459 146 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 ADCY5O95622 1261 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 CEACAM1P13688 526 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 VAV1P15498 845 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 CHRNB2P17787 502 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 MATKP42679 507 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 JAM2P57087 298 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 BPIFB4P59827 614 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 NOMO3P69849 1222 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 FAM193AP78312 1265 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 ECT2LQ008S8 904 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 ZBTB16Q05516 673 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 ZNF252P-AS1Q0IIN9 211 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 GRIK2Q13002 908 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 C5orf22Q49AR2 442 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 WDR45BQ5MNZ6 344 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 APTXQ7Z2E3 356 aaKnown RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 BNIPLQ7Z465 357 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 RABEPKQ7Z6M1 372 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 TMEM35BQ8NCS4 154 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 NOX5Q96PH1 765 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 FAM129BQ96TA1 746 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 FBRSQ9HAH7 460 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 SUN2Q9UH99 717 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 EIF2B4Q9UI10 523 aaKnown RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 VANGL2Q9ULK5 521 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 TYW5A2RUC4 315 aaKnown RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 MEI4A8MW99 385 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PES1O00541 588 aaKnown RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 SRPRAP08240 638 aaKnown RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 SLC2A3P11169 496 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PDGFRAP16234 1089 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 ABCB4P21439 1286 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 CXCR3P49682 368 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PLK1P53350 603 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 ZNF776Q68DI1 518 aaPredicted RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 FRS2Q8WU20 508 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PTPRN2Q92932 1015 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PGAP3Q96FM1 320 aaPredicted RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 TBCBQ99426 244 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PCED1AQ9H1Q7 454 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PABPC3Q9H361 631 aaKnown RBP14.55□□□□□ -0.08
UPF3A-204ENST00000475218 IL21RQ9HBE5 538 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 ARHGEF38Q9NXL2 777 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 TMEM59LQ9UK28 342 aa14.55□□□□□ -0.08
UPF3A-204ENST00000475218 PLXNA2O75051 1894 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 A0A1B0GTW7 788 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 A0A1B0GVM2 712 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 TCAF2A6NFQ2 919 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 FLT3P36888 993 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 SCNN1AP37088 669 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 METAP1P53582 386 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 RNASE9P60153 205 aaKnown RBP14.54□□□□□ -0.08
UPF3A-204ENST00000475218 NCAPHQ15003 741 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 RAB6CQ53S08 254 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 ZDHHC17Q8IUH5 632 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 CPA5Q8WXQ8 436 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 BIRC7Q96CA5 298 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms