RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 GRSF1Q12849 480 aaKnown RBP eCLIP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ERO1BQ86YB8 467 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TMEM79Q9BSE2 394 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TRIM36Q9NQ86 728 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 GTPBP1O00178 669 aaKnown RBP13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 AREL1O15033 823 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RAD51BO15315 384 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SKP1P63208 163 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 GPAT3Q53EU6 434 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ZCCHC2Q9C0B9 1178 aaKnown RBP13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 HMX1Q9NP08 348 aaPredicted RBP13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MUTP22033 750 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RPA1P27694 616 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 AQP5P55064 265 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FBXO47Q5MNV8 452 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RAB11FIP2Q7L804 512 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 LRRC70Q7Z2Q7 622 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FAM9CQ8IZT9 166 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NAT16Q8N8M0 369 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ANKFN1Q8N957 763 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ATP6V1C2Q8NEY4 427 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MRGBPQ9NV56 204 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 KCND2Q9NZV8 630 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RHOBTB3O94955 611 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 IST1P53990 364 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BEX3Q00994 111 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 GNA13Q14344 377 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PJA1Q8NG27 643 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MCOLN3Q8TDD5 553 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CISHQ9NSE2 258 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TOR4AQ9NXH8 423 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ZNF112Q9UJU3 913 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 LOC100506127A0A0U1RQW1 187 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TMCC2O75069 709 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 GLRA3O75311 464 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 OR56A5P0C7T3 313 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CCL23P55773 120 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MYBPC1Q00872 1141 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 HSPA14Q0VDF9 509 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 EID3Q8N140 333 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DDHD1Q8NEL9 900 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PROX1Q92786 737 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FATE1Q969F0 183 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ZIM3Q96PE6 472 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MID1IP1Q9NPA3 183 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PHTF1Q9UMS5 762 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MAP1BP46821 2468 aaKnown RBP13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SLC37A4O43826 429 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ZBTB14O43829 449 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MAFKO60675 156 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FARP2O94887 1054 aaPredicted RBP13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 POLD2P49005 469 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RASSF5Q8WWW0 418 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FBXO44Q9H4M3 255 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BCLAF3A2AJT9 711 aaKnown RBP13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BTN3A1O00481 513 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TRIM66O15016 1216 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ABL2P42684 1182 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 LAMTOR4Q0VGL1 99 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NEDD8Q15843 81 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RNF19BQ6ZMZ0 732 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DAW1Q8N136 415 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FRMD8Q9BZ67 464 aaPredicted RBP13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TM6SF2Q9BZW4 377 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 EPB41L4BQ9H329 900 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ANGPT4Q9Y264 503 aa13.48□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 KCNK1O00180 336 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SNRNP200O75643 2136 aaKnown RBP13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FAM86B2P0C5J1 330 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FGFR3P22607 806 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CTNNB1P35222 781 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CDH8P55286 799 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BACE1P56817 501 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BMPR2Q13873 1038 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CDC73Q6P1J9 531 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 METTL6Q8TCB7 284 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MROH8Q9H579 483 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 C10orf88Q9H8K7 445 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ARL15Q9NXU5 204 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NCKIPSDQ9NZQ3 722 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PCDHB5Q9Y5E4 795 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 C1orf232A0A0U1RR37 186 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TRAPPC12Q8WVT3 735 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NMD3Q96D46 503 aaKnown RBP13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CNPY3Q9BT09 278 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TNKS2Q9H2K2 1166 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CAB39LQ9H9S4 337 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ANKEF1Q9NU02 776 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ICAM1P05362 532 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ATP5BP06576 529 aaKnown RBP13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ARP10275 920 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CYP2C8P10632 490 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 AKT2P31751 481 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RPL4P36578 427 aaKnown RBP13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NFE2Q16621 373 aaPredicted RBP13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 KBTBD12Q3ZCT8 623 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ZBTB49Q6ZSB9 765 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TMEM176AQ96HP8 235 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RAD54BQ9Y620 910 aa13.47□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ENTPD3O75355 529 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms