RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 SCAPQ12770 1279 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 SUZ12Q15022 739 aaKnown RBP21.79■■□□□ 1.08
COL9A3-207ENST00000467819 CST6Q15828 149 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 KIAA0895LQ68EN5 471 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 GJB7Q6PEY0 223 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 USP30Q70CQ3 517 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 BEND5Q7L4P6 421 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 MMAAQ8IVH4 418 aaKnown RBP21.79■■□□□ 1.08
COL9A3-207ENST00000467819 STK32AQ8WU08 396 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 CDC6Q99741 560 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 CRACR2AQ9BSW2 395 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 POPDC2Q9HBU9 364 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 KIAA1522Q9P206 1035 aaPredicted RBP21.79■■□□□ 1.08
COL9A3-207ENST00000467819 SCML1Q9UN30 329 aa21.79■■□□□ 1.08
COL9A3-207ENST00000467819 ACACAQ13085 2346 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 SRPRAP08240 638 aaKnown RBP21.78■■□□□ 1.08
COL9A3-207ENST00000467819 ATXN1LP0C7T5 689 aaKnown RBP21.78■■□□□ 1.08
COL9A3-207ENST00000467819 USP8P40818 1118 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 YWHAZP63104 245 aaKnown RBP21.78■■□□□ 1.08
COL9A3-207ENST00000467819 MEA1Q16626 185 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 KCNT1Q5JUK3 1230 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 C9orf64Q5T6V5 341 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 RNF219Q5W0B1 726 aaPredicted RBP21.78■■□□□ 1.08
COL9A3-207ENST00000467819 NCEH1Q6PIU2 408 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 CCNI2Q6ZMN8 369 aaPredicted RBP21.78■■□□□ 1.08
COL9A3-207ENST00000467819 DBX2Q6ZNG2 339 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 CREBRFQ8IUR6 639 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 APCDD1Q8J025 514 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 KDM1BQ8NB78 822 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 IGSF8Q969P0 613 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 BTN2A3PQ96KV6 586 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 RPL10LQ96L21 214 aaKnown RBP21.78■■□□□ 1.08
COL9A3-207ENST00000467819 OMDQ99983 421 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 ORAI3Q9BRQ5 295 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 SLCO3A1Q9UIG8 710 aa21.78■■□□□ 1.08
COL9A3-207ENST00000467819 LAMA5O15230 3695 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 EDDM13A0A1B0GTR0 161 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 F5H5T6 163 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 H0Y8X5 98 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 TAF4O00268 1085 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 RNASEH2AO75792 299 aaKnown RBP21.77■■□□□ 1.08
COL9A3-207ENST00000467819 FGFR1OPO95684 399 aaKnown RBP21.77■■□□□ 1.08
COL9A3-207ENST00000467819 PSMD8P48556 350 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 STK19P49842 368 aaPredicted RBP21.77■■□□□ 1.08
COL9A3-207ENST00000467819 CCT8P50990 548 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 GALCP54803 685 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 ECT2LQ008S8 904 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 IL9RQ01113 521 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 SFSWAPQ12872 951 aaKnown RBP21.77■■□□□ 1.08
COL9A3-207ENST00000467819 PDCLQ13371 301 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 TAF5Q15542 800 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 ARHGAP44Q17R89 818 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 TMEM110Q86TL2 294 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 CIR1Q86X95 450 aaPredicted RBP21.77■■□□□ 1.08
COL9A3-207ENST00000467819 PROSER1Q86XN7 944 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 ATP6V0D2Q8N8Y2 350 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 SLC6A18Q96N87 628 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 MED15Q96RN5 788 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 NEUROG2Q9H2A3 272 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 THAP9Q9H5L6 903 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 FAM204AQ9H8W3 233 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 TOR4AQ9NXH8 423 aa21.77■■□□□ 1.08
COL9A3-207ENST00000467819 ITIH6Q6UXX5 1313 aa21.77■■□□□ 1.07
COL9A3-207ENST00000467819 DOCK9Q9BZ29 2069 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 SYNJ2BP-COX16A0A087WUM0 186 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 TARSL2A2RTX5 802 aaKnown RBP21.76■■□□□ 1.07
COL9A3-207ENST00000467819 APC2O95996 2303 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 IGLV3-25P01717 112 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 SLC8A1P32418 973 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 CTSKP43235 329 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 ARID5BQ14865 1188 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 TRIM65Q6PJ69 517 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 ENOSF1Q7L5Y1 443 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 STK40Q8N2I9 435 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 COX16Q9P0S2 106 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 ADAMTS20P59510 1910 aa21.76■■□□□ 1.07
COL9A3-207ENST00000467819 A0A1W2PPC4 97 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 LRRC72A6NJI9 287 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 BECN2A8MW95 431 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 CAPNS1P04632 268 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 PDGFRAP16234 1089 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 SLC9A1P19634 815 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 C21orf59P57076 290 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 RACK1P63244 317 aaKnown RBP21.75■■□□□ 1.07
COL9A3-207ENST00000467819 APBA1Q02410 837 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 PASD1Q8IV76 773 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 RNF34Q969K3 372 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 FAM129BQ96TA1 746 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 ACE2Q9BYF1 805 aaPredicted RBP21.75■■□□□ 1.07
COL9A3-207ENST00000467819 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.75■■□□□ 1.07
COL9A3-207ENST00000467819 SLC12A6Q9UHW9 1150 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 LHX6Q9UPM6 363 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 ITPR1Q14643 2758 aa21.75■■□□□ 1.07
COL9A3-207ENST00000467819 KCNU1A8MYU2 1149 aa21.74■■□□□ 1.07
COL9A3-207ENST00000467819 GRK6P43250 576 aa21.74■■□□□ 1.07
COL9A3-207ENST00000467819 CDK17Q00537 523 aa21.74■■□□□ 1.07
COL9A3-207ENST00000467819 CCDC157Q569K6 752 aa21.74■■□□□ 1.07
COL9A3-207ENST00000467819 DEFB106AQ8N104 65 aa21.74■■□□□ 1.07
COL9A3-207ENST00000467819 CCAR2Q8N163 923 aaKnown RBP21.74■■□□□ 1.07
COL9A3-207ENST00000467819 AADATQ8N5Z0 425 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms