RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 HSF1Q00613 529 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 GHRHRQ02643 423 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 PDCLQ13371 301 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 SMAD1Q15797 465 aaKnown RBP4.46□□□□□ -1.7
USP40-209ENST00000452724 RHPN2Q8IUC4 686 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 FTSJ3Q8IY81 847 aaKnown RBP4.46□□□□□ -1.7
USP40-209ENST00000452724 NANOGP1Q8N7R0 232 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 AFG1LQ8WV93 481 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 RILPL2Q969X0 211 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 TWSG1Q9GZX9 223 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 PDE11AQ9HCR9 933 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 ERVK-5Q9HDB9 667 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 MLXIPLQ9NP71 852 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 TRNAU1APQ9NX07 287 aaKnown RBP4.46□□□□□ -1.7
USP40-209ENST00000452724 GPR52Q9Y2T5 361 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 DGKBQ9Y6T7 804 aa4.46□□□□□ -1.7
USP40-209ENST00000452724 SLC22A23A1A5C7 686 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 MYMKA6NI61 221 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 B9A039 149 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 SOCS2O14508 198 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 HNRNPRO43390 633 aaKnown RBP4.45□□□□□ -1.7
USP40-209ENST00000452724 KCNAB3O43448 404 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 FGBP02675 491 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 TK1P04183 234 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 CD63P08962 238 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 HOXB6P17509 224 aaKnown RBP4.45□□□□□ -1.7
USP40-209ENST00000452724 TGM2P21980 687 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 NR4A2P43354 598 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 RBM5P52756 815 aaKnown RBP eCLIP4.45□□□□□ -1.7
USP40-209ENST00000452724 CFHR1Q03591 330 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 PPFIA1Q13136 1202 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 DCTN1Q14203 1278 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 ANKRD45Q5TZF3 282 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 ZNF474Q6S9Z5 364 aaPredicted RBP4.45□□□□□ -1.7
USP40-209ENST00000452724 KIAA1324Q6UXG2 1013 aaKnown RBP4.45□□□□□ -1.7
USP40-209ENST00000452724 SYNE3Q6ZMZ3 975 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 MYRIPQ8NFW9 859 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 ZFPM2Q8WW38 1151 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 KAT2BQ92831 832 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 NPAS1Q99742 590 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 SPRTNQ9H040 489 aaPredicted RBP4.45□□□□□ -1.7
USP40-209ENST00000452724 OSBPL5Q9H0X9 879 aaPredicted RBP4.45□□□□□ -1.7
USP40-209ENST00000452724 LUZP4Q9P127 313 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 FEM1BQ9UK73 627 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 RCE1Q9Y256 329 aa4.45□□□□□ -1.7
USP40-209ENST00000452724 GRM8O00222 908 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 TFEBP19484 476 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 PPM1FP49593 454 aaPredicted RBP4.44□□□□□ -1.7
USP40-209ENST00000452724 SLC12A2P55011 1212 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 ACTR2P61160 394 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 B4GALNT1Q00973 533 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 SLC9C1Q4G0N8 1177 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 Q4G0T1 1027 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 LRRC24Q50LG9 513 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 RASGRP2Q7LDG7 609 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 C2CD5Q86YS7 1000 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 ANKRD18AQ8IVF6 992 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 PTGR2Q8N8N7 351 aaPredicted RBP4.44□□□□□ -1.7
USP40-209ENST00000452724 FSIP1Q8NA03 581 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 OR52N4Q8NGI2 321 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 BCAS4Q8TDM0 211 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 ATP2A3Q93084 1043 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 ARRDC3Q96B67 414 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 ZNF347Q96SE7 839 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 ARHGAP39Q9C0H5 1083 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 CHODLQ9H9P2 273 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 MTMR4Q9NYA4 1195 aa4.44□□□□□ -1.7
USP40-209ENST00000452724 C2CD4BA6NLJ0 364 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 SEPT4O43236 478 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 TMEM191BP0C7N4 346 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 HSD3B1P14060 373 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 RXRAP19793 462 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 CCT5P48643 541 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 PAPOLAP51003 745 aaKnown RBP4.43□□□□□ -1.7
USP40-209ENST00000452724 RPS13P62277 151 aaKnown RBP4.43□□□□□ -1.7
USP40-209ENST00000452724 CDK18Q07002 472 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 BIRC3Q13489 604 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 STIM1Q13586 685 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 FHL1Q13642 323 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 GPR162Q16538 588 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 ZNF260Q3ZCT1 412 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 EARS2Q5JPH6 523 aaKnown RBP4.43□□□□□ -1.7
USP40-209ENST00000452724 FBXO47Q5MNV8 452 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 LCE1AQ5T7P2 110 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 LIPMQ5VYY2 423 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 AWAT2Q6E213 333 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 SHC4Q6S5L8 630 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 ANKS1BQ7Z6G8 1248 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 TECPR1Q7Z6L1 1165 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 UBE2Q1Q7Z7E8 422 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 CPXCR1Q8N123 301 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 TMEM57Q8N5G2 664 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 ENDOVQ8N8Q3 282 aaKnown RBP4.43□□□□□ -1.7
USP40-209ENST00000452724 ARL14EPQ8N8R7 260 aaPredicted RBP4.43□□□□□ -1.7
USP40-209ENST00000452724 EXD3Q8N9H8 876 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 FAM47BQ8NA70 645 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 C16orf52Q8NHV5 167 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 GCC1Q96CN9 775 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 KTI12Q96EK9 354 aaPredicted RBP4.43□□□□□ -1.7
USP40-209ENST00000452724 ZSCAN31Q96LW9 406 aaPredicted RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms