RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 MYLK4Q86YV6 388 aaPredicted RBP12.1□□□□□ -0.47
CD44-209ENST00000433892 PSTKQ8IV42 348 aaKnown RBP12.1□□□□□ -0.47
CD44-209ENST00000433892 DCLK2Q8N568 766 aa12.1□□□□□ -0.47
CD44-209ENST00000433892 NT5C3BQ969T7 300 aa12.1□□□□□ -0.47
CD44-209ENST00000433892 NPY6RQ99463 290 aa12.1□□□□□ -0.47
CD44-209ENST00000433892 AGAP2Q99490 1192 aa12.1□□□□□ -0.47
CD44-209ENST00000433892 ZNF184Q99676 751 aaPredicted RBP12.1□□□□□ -0.47
CD44-209ENST00000433892 LRRC4Q9HBW1 653 aa12.1□□□□□ -0.47
CD44-209ENST00000433892 ANGPTL2Q9UKU9 493 aa12.1□□□□□ -0.47
CD44-209ENST00000433892 PPM1HQ9ULR3 514 aa12.1□□□□□ -0.47
CD44-209ENST00000433892 RALGAPA2Q2PPJ7 1873 aa12.1□□□□□ -0.47
CD44-209ENST00000433892 RRN3P2A6NIE6 340 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 KLHL2O95198 593 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 SMIM10L2AP0DMW4 78 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 SMIM10L2BP0DMW5 78 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 CYP2C9P11712 490 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 CPA3P15088 417 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 NPR3P17342 541 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 GRK2P25098 689 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 YY1P25490 414 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 ABCE1P61221 599 aaKnown RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 AP2B1P63010 937 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 DPYSQ14117 519 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 HIC1Q14526 733 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 PAFAH1B3Q15102 231 aaKnown RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 PAQR9Q6ZVX9 377 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 STRA8Q7Z7C7 330 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 SIX6OS1Q8N1H7 587 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 PLD6Q8N2A8 252 aaKnown RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 SLC7A14Q8TBB6 771 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 DNAJB3Q8WWF6 145 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 ZNF669Q96BR6 464 aaPredicted RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 HNRNPABQ99729 332 aaKnown RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 CPNE1Q99829 537 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 GORASP1Q9BQQ3 440 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 OXCT2Q9BYC2 517 aaPredicted RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 ANLNQ9NQW6 1124 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 RNF181Q9P0P0 153 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 IGSF9Q9P2J2 1179 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 PDHXO00330 501 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 DCLK1O15075 740 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 USP1O94782 785 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 AMHP03971 560 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 HOXD8P13378 290 aaPredicted RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 ERCC2P18074 760 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 NCF2P19878 526 aaPredicted RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 MX2P20592 715 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 PTPN3P26045 913 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 PNPLA4P41247 253 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 GARSP41250 739 aaKnown RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 COPAP53621 1224 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 MAP3K7CLP57077 242 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 INSCQ1MX18 579 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 SV2CQ496J9 727 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 SPANXN3Q5MJ09 141 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 GRTP1Q5TC63 336 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 BNIPLQ7Z465 357 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 DNAAF3Q8N9W5 541 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 ARRDC4Q8NCT1 418 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 WNT8BQ93098 351 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 STN1Q9H668 368 aaKnown RBP12.09□□□□□ -0.47
CD44-209ENST00000433892 CAB39LQ9H9S4 337 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 VANGL2Q9ULK5 521 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 STAP1Q9ULZ2 295 aa12.09□□□□□ -0.47
CD44-209ENST00000433892 LOC100653049A0A140TA62 436 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 I6L893 689 aaPredicted RBP12.08□□□□□ -0.48
CD44-209ENST00000433892 ZNF195O14628 629 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 NRP1O14786 923 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 DYNC1LI2O43237 492 aaPredicted RBP12.08□□□□□ -0.48
CD44-209ENST00000433892 MAP3K13O43283 966 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 KRT34O76011 436 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 SORBS2O94875 1100 aaKnown RBP12.08□□□□□ -0.48
CD44-209ENST00000433892 PTPN1P18031 435 aaKnown RBP12.08□□□□□ -0.48
CD44-209ENST00000433892 SP100P23497 879 aaPredicted RBP12.08□□□□□ -0.48
CD44-209ENST00000433892 TKTL1P51854 596 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 USP4Q13107 963 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 PEX6Q13608 980 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 LBRQ14739 615 aaKnown RBP12.08□□□□□ -0.48
CD44-209ENST00000433892 DLG2Q15700 870 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 HSP90AA5PQ58FG0 334 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 WSCD1Q658N2 575 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 PDPK2PQ6A1A2 396 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 FSTL4Q6MZW2 842 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 CLEC20AQ6ZU45 233 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 LIMS2Q7Z4I7 341 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.08□□□□□ -0.48
CD44-209ENST00000433892 SLC10A4Q96EP9 437 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 MFSD3Q96ES6 412 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 MAML3Q96JK9 1138 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 RBBP8Q99708 897 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 MED10Q9BTT4 135 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 PPP1R12CQ9BZL4 782 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 LRRC40Q9H9A6 602 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 CYP4F11Q9HBI6 524 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 MAN1C1Q9NR34 630 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 NDE1Q9NXR1 346 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 CACNG4Q9UBN1 327 aa12.08□□□□□ -0.48
CD44-209ENST00000433892 SF3B1O75533 1304 aaKnown RBP eCLIP12.08□□□□□ -0.488e-6■■■■■ 107
CD44-209ENST00000433892 DICER1Q9UPY3 1922 aaKnown RBP12.08□□□□□ -0.48
CD44-209ENST00000433892 ZBTB24O43167 697 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms