RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 FKBP1CQ5VVH2 108 aa12.78□□□□□ -0.36
CDH3-202ENST00000429102 CMTM5Q96DZ9 223 aa12.78□□□□□ -0.36
CDH3-202ENST00000429102 SPATC1LQ9H0A9 340 aa12.78□□□□□ -0.36
CDH3-202ENST00000429102 EFR3BQ9Y2G0 817 aa12.78□□□□□ -0.36
CDH3-202ENST00000429102 C15orf38-AP3S2A0A0A6YYH1 394 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.77□□□□□ -0.36
CDH3-202ENST00000429102 C1QAP02745 245 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 WASHC5Q12768 1159 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 KLF10Q13118 480 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 CTBP1Q13363 440 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 SLC5A9Q2M3M2 681 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 RWDD4Q6NW29 188 aaKnown RBP12.77□□□□□ -0.36
CDH3-202ENST00000429102 ARPINQ7Z6K5 226 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 BHLHE22Q8NFJ8 381 aaPredicted RBP12.77□□□□□ -0.36
CDH3-202ENST00000429102 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.77□□□□□ -0.36
CDH3-202ENST00000429102 SLC7A14Q8TBB6 771 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 PCDHAC1Q9H158 963 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 VCX3BQ9H321 246 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 TCF7L2Q9NQB0 619 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 NUDT5Q9UKK9 219 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 ARHGAP26Q9UNA1 814 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 FAM159BA6NKW6 160 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 ABLIM1O14639 778 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 TRDMT1O14717 391 aaKnown RBP12.77□□□□□ -0.36
CDH3-202ENST00000429102 PIGNO95427 931 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 MX2P20592 715 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 MAPK10P53779 464 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 RALGDSQ12967 914 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 SEPT6Q14141 434 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 KCTD2Q14681 263 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 USP10Q14694 798 aaKnown RBP12.77□□□□□ -0.36
CDH3-202ENST00000429102 PDK2Q15119 407 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 PAN2Q504Q3 1202 aaKnown RBP12.77□□□□□ -0.36
CDH3-202ENST00000429102 FSTL4Q6MZW2 842 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 OLFML1Q6UWY5 402 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 TSHZ1Q6ZSZ6 1077 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 AMIGO2Q86SJ2 522 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 RYBPQ8N488 228 aaPredicted RBP12.77□□□□□ -0.36
CDH3-202ENST00000429102 AFG1LQ8WV93 481 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 ZMAT2Q96NC0 199 aaKnown RBP12.77□□□□□ -0.36
CDH3-202ENST00000429102 C2orf40Q9H1Z8 148 aa12.77□□□□□ -0.36
CDH3-202ENST00000429102 IRF6O14896 467 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 PLSCR1O15162 318 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 RTN3O95197 1032 aaPredicted RBP12.77□□□□□ -0.37
CDH3-202ENST00000429102 GABRB2P47870 512 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 CDK7P50613 346 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 RPS6KA3P51812 740 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 THOP1P52888 689 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 POU6F1Q14863 301 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 TLR1Q15399 786 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 CATSPER4Q7RTX7 472 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 ZNF354CQ86Y25 554 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 SORT1Q99523 831 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 GBA2Q9HCG7 927 aaPredicted RBP12.77□□□□□ -0.37
CDH3-202ENST00000429102 TLK1Q9UKI8 766 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 RUVBL2Q9Y230 463 aaKnown RBP12.77□□□□□ -0.37
CDH3-202ENST00000429102 V9GYQ6 96 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 ANKRD31Q8N7Z5 1873 aa12.77□□□□□ -0.37
CDH3-202ENST00000429102 ZBTB42B2RXF5 422 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 FOXD2O60548 495 aaPredicted RBP12.76□□□□□ -0.37
CDH3-202ENST00000429102 DNAJA2O60884 412 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 C2P06681 752 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 POLBP06746 335 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 UQCRBP14927 111 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 SCNN1BP51168 640 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 FBXO48Q5FWF7 155 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 SYPL2Q5VXT5 272 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 KCTD4Q8WVF5 259 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 OSMRQ99650 979 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 EIF2AQ9BY44 585 aaKnown RBP12.76□□□□□ -0.37
CDH3-202ENST00000429102 PDZD7Q9H5P4 517 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 TXNRD2Q9NNW7 524 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 PIM2Q9P1W9 311 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 F8W8V4 182 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 FAM72CH0Y354 149 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 BUD23O43709 281 aaKnown RBP12.76□□□□□ -0.37
CDH3-202ENST00000429102 SNNO75324 88 aaPredicted RBP12.76□□□□□ -0.37
CDH3-202ENST00000429102 CLPTM1O96005 669 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 JCHAINP01591 159 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 VGLL4Q14135 290 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 GEN1Q17RS7 908 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 FAM72AQ5TYM5 149 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 NCBP2-AS2Q69YL0 99 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 FAM72DQ6L9T8 149 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 HFE2Q6ZVN8 426 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 FAM72BQ86X60 149 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 PDSS2Q86YH6 399 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 ZNF567Q8N184 647 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 RNF169Q8NCN4 708 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 EZH1Q92800 747 aaPredicted RBP12.76□□□□□ -0.37
CDH3-202ENST00000429102 ERLEC1Q96DZ1 483 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 TSNARE1Q96NA8 513 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 GATA5Q9BWX5 397 aaPredicted RBP12.76□□□□□ -0.37
CDH3-202ENST00000429102 BCO2Q9BYV7 579 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 TRIM8Q9BZR9 551 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 CAAP1Q9H8G2 361 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 ZNF408Q9H9D4 720 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 CHST12Q9NRB3 414 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 FETUBQ9UGM5 382 aa12.76□□□□□ -0.37
CDH3-202ENST00000429102 NME7Q9Y5B8 376 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms