RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 SHROOM3Q8TF72 1996 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 ABLIM3O94929 683 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 CREB1P16220 341 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 LBX1P52954 281 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 ZBTB17Q13105 803 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 ZNF683Q8IZ20 524 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 ZNF461Q8TAF7 563 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 CFAP36Q96G28 342 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 SIGLEC10Q96LC7 697 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 SPG21Q9NZD8 308 aa27.2■■□□□ 1.94
LDB1-202ENST00000425280 CHN1P15882 459 aa27.19■■□□□ 1.94
LDB1-202ENST00000425280 SARNPP82979 210 aaKnown RBP27.19■■□□□ 1.94
LDB1-202ENST00000425280 COG7P83436 770 aa27.19■■□□□ 1.94
LDB1-202ENST00000425280 RASA2Q15283 850 aa27.19■■□□□ 1.94
LDB1-202ENST00000425280 KLHL38Q2WGJ6 581 aa27.19■■□□□ 1.94
LDB1-202ENST00000425280 LZTR1Q8N653 840 aa27.19■■□□□ 1.94
LDB1-202ENST00000425280 MRRFQ96E11 262 aaKnown RBP27.19■■□□□ 1.94
LDB1-202ENST00000425280 NDFIP2Q9NV92 336 aa27.19■■□□□ 1.94
LDB1-202ENST00000425280 MPP6Q9NZW5 540 aa27.19■■□□□ 1.94
LDB1-202ENST00000425280 SLC12A8A0AV02 714 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 DFFAO00273 331 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 SPAG6O75602 509 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 IGLV3-27P01718 113 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 MS4A13Q5J8X5 152 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 ATP6V0D2Q8N8Y2 350 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 GORASP1Q9BQQ3 440 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 PLAC1Q9HBJ0 212 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 PSMC3IPQ9P2W1 217 aaPredicted RBP27.18■■□□□ 1.94
LDB1-202ENST00000425280 ZC3H7BQ9UGR2 993 aaKnown RBP27.18■■□□□ 1.94
LDB1-202ENST00000425280 TCRBV9S1A1TA0A576 114 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 ZBTB24O43167 697 aaPredicted RBP27.18■■□□□ 1.94
LDB1-202ENST00000425280 TLR5O60602 858 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 PIAS1O75925 651 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 ZNF33AQ06730 810 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 ARHGAP36Q6ZRI8 547 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 MPP5Q8N3R9 675 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 RTL3Q8N8U3 475 aaKnown RBP27.18■■□□□ 1.94
LDB1-202ENST00000425280 ZSCAN18Q8TBC5 510 aaPredicted RBP27.18■■□□□ 1.94
LDB1-202ENST00000425280 BTN2A3PQ96KV6 586 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 DHRS4Q9BTZ2 278 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 SLC39A8Q9C0K1 460 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 TRHDEQ9UKU6 1024 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 VANGL2Q9ULK5 521 aa27.18■■□□□ 1.94
LDB1-202ENST00000425280 MKI67P46013 3256 aaKnown RBP27.17■■□□□ 1.94
LDB1-202ENST00000425280 HMBSP08397 361 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 MLNP12872 115 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 CD68P34810 354 aaPredicted RBP27.17■■□□□ 1.94
LDB1-202ENST00000425280 TEX44Q53QW1 395 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 TPGS2Q68CL5 300 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 DDX53Q86TM3 631 aaKnown RBP27.17■■□□□ 1.94
LDB1-202ENST00000425280 TSGA13Q96PP4 275 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 VAT1Q99536 393 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 HSFX1Q9UBD0 423 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 WASH4PA8MWX3 477 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 BAIAP3O94812 1187 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 CPP00450 1065 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 AFMIDQ63HM1 303 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 LRRC8BQ6P9F7 803 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 OTOP2Q7RTS6 562 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 SRRM1Q8IYB3 904 aaKnown RBP27.17■■□□□ 1.94
LDB1-202ENST00000425280 CENPTQ96BT3 561 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 AGAP3Q96P47 875 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 CYTH2Q99418 400 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 PAFAH2Q99487 392 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 EBNA1BP2Q99848 306 aaKnown RBP27.17■■□□□ 1.94
LDB1-202ENST00000425280 ACTL7BQ9Y614 415 aa27.17■■□□□ 1.94
LDB1-202ENST00000425280 PTPRSQ13332 1948 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 CCNCP24863 283 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 NR1H3Q13133 447 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 TRABD2AQ86V40 505 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 NLRP14Q86W24 1093 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 ATPAF2Q8N5M1 289 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 YME1L1Q96TA2 773 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 EPN3Q9H201 632 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 GBA3Q9H227 469 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 RABEP2Q9H5N1 569 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 CYP4F11Q9HBI6 524 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 RSPH14Q9UHP6 348 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 TTLL3Q9Y4R7 772 aa27.16■■□□□ 1.94
LDB1-202ENST00000425280 RASA4BC9J798 803 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 RASA4O43374 803 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 JCHAINP01591 159 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 RING1Q06587 406 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 ADGRD1Q6QNK2 874 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 TEKT5Q96M29 485 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 IL23AQ9NPF7 189 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 MAD1L1Q9Y6D9 718 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 URODP06132 367 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 BRAFP15056 766 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 HMGA1P17096 107 aaKnown RBP27.15■■□□□ 1.94
LDB1-202ENST00000425280 ZNF276Q8N554 614 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 AUTS2Q8WXX7 1259 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 TMEM106CQ9BVX2 250 aa27.15■■□□□ 1.94
LDB1-202ENST00000425280 PPARGC1AQ9UBK2 798 aaKnown RBP27.15■■□□□ 1.94
LDB1-202ENST00000425280 TMEM120BA0PK00 339 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 SRRM3A6NNA2 597 aaPredicted RBP27.14■■□□□ 1.94
LDB1-202ENST00000425280 STX2P32856 288 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 KBTBD12Q3ZCT8 623 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 SNX30Q5VWJ9 437 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 ITPRIPL1Q6GPH6 555 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms