RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ARMC1Q9NVT9 282 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 A0A0B4J269 797 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ADAM23O75077 832 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ITGAXP20702 1163 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 CYP3A5P20815 502 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 TPTEP56180 551 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 MTFR1Q15390 333 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 RFWD3Q6PCD5 774 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 B3GNT9Q6UX72 402 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 LRRC8DQ7L1W4 858 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 CDKL2Q92772 493 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 TLCD1Q96CP7 247 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 MTBPQ96DY7 904 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 DDX47Q9H0S4 455 aaKnown RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 HIPK3Q9H422 1215 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 EPB41L1Q9H4G0 881 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 XPNPEP1Q9NQW7 623 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 SAR1AQ9NR31 198 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 GNPTGQ9UJJ9 305 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 M0QYV0 167 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 BMP10O95393 424 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 PON1P27169 355 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 IFI35P80217 286 aaPredicted RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 TRMT5Q32P41 509 aaKnown RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 IGSF11Q5DX21 431 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 FAM122CQ6P4D5 195 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 TRAF7Q6Q0C0 670 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 SV2AQ7L0J3 742 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ZNF572Q7Z3I7 529 aaPredicted RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 GPIHBP1Q8IV16 184 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 RAVER1Q8IY67 606 aaKnown RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 NATD1Q8N6N6 113 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 HELQQ8TDG4 1101 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 GDPD5Q8WTR4 605 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ADAM2Q99965 735 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 FZD8Q9H461 694 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ASNSD1Q9NWL6 643 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ST3GAL5Q9UNP4 418 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 PTPN22Q9Y2R2 807 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 PCDHB12Q9Y5F1 795 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 A0A0G2JND7 137 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 LSM8O95777 96 aaKnown RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 PMLP29590 882 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 CASP4P49662 377 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 MOGSQ13724 837 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 NFE2Q16621 373 aaPredicted RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 ITIH5Q86UX2 942 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 OSTM1Q86WC4 334 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 LRRC52Q8N7C0 313 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 GRK7Q8WTQ7 553 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 PLEKHA8Q96JA3 519 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 MED15Q96RN5 788 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 SLITRK6Q9H5Y7 841 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ADAMTS1Q9UHI8 967 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ZW10O43264 779 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 B4GALT4O60513 344 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 CXCL8P10145 99 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 GNL1P36915 607 aaPredicted RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 OR1G1P47890 313 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 PPP2R2BQ00005 443 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 SCRN3Q0VDG4 424 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 CDC16Q13042 620 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 SPARCL1Q14515 664 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 TARBP2Q15633 366 aaKnown RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 RSBN1Q5VWQ0 802 aaPredicted RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 SPOPLQ6IQ16 392 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 AAGABQ6PD74 315 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ISLR2Q6UXK2 745 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ECHDC2Q86YB7 292 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 KIAA0319LQ8IZA0 1049 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 FAM149B1Q96BN6 582 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 CITED4Q96RK1 184 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 ARHGAP39Q9C0H5 1083 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 UPF3AQ9H1J1 476 aaKnown RBP10.03□□□□□ -0.8
USP54-205ENST00000424265 SNTG2Q9NY99 539 aa10.03□□□□□ -0.8
USP54-205ENST00000424265 RNASEH1O60930 286 aaKnown RBP10.02□□□□□ -0.8
USP54-205ENST00000424265 DEAF1O75398 565 aaPredicted RBP10.02□□□□□ -0.8
USP54-205ENST00000424265 RGS20O76081 388 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 ALDH2P05091 517 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 CPB1P15086 417 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 C1QTNF8P60827 252 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 SLC18A3Q16572 532 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 ZNF618Q5T7W0 954 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 ZNF662Q6ZS27 426 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 PMM1Q92871 262 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 RHOBTB2Q9BYZ6 727 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 PHTF1Q9UMS5 762 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 PLAGL2Q9UPG8 496 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 REXO2Q9Y3B8 237 aaKnown RBP10.02□□□□□ -0.8
USP54-205ENST00000424265 RWDD3Q9Y3V2 267 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 ADGRA2Q96PE1 1338 aa10.02□□□□□ -0.8
USP54-205ENST00000424265 RRM1P23921 792 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 XIAPP98170 497 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 MBTD1Q05BQ5 628 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 PHKG1Q16816 387 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 RARS2Q5T160 578 aaKnown RBP10.02□□□□□ -0.81
USP54-205ENST00000424265 ITPRIPL1Q6GPH6 555 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 DCDC5Q6ZRR9 648 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 UNC93AQ86WB7 457 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 CATSPER1Q8NEC5 780 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms