RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PDGFRAP16234 1089 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 CD27P26842 260 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 MZF1P28698 734 aaPredicted RBP11.96□□□□□ -0.49
USP4-204ENST00000416417 ACADSBP45954 432 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 IRAK1P51617 712 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 GALCP54803 685 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 MARSP56192 900 aaKnown RBP11.96□□□□□ -0.49
USP4-204ENST00000416417 CENPCQ03188 943 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 PDCLQ13371 301 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 CST6Q15828 149 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 C19orf48Q6RUI8 117 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 IL27RAQ6UWB1 636 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 ADAT2Q7Z6V5 191 aaKnown RBP11.96□□□□□ -0.49
USP4-204ENST00000416417 DEFB106AQ8N104 65 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 WDTC1Q8N5D0 677 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 AADATQ8N5Z0 425 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 BAHD1Q8TBE0 780 aaPredicted RBP11.96□□□□□ -0.49
USP4-204ENST00000416417 MDM1Q8TC05 714 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 CPXM1Q96SM3 734 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 FAM129BQ96TA1 746 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 DDX50Q9BQ39 737 aaKnown RBP11.96□□□□□ -0.49
USP4-204ENST00000416417 PCED1AQ9H1Q7 454 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 FAM204AQ9H8W3 233 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 POPDC2Q9HBU9 364 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 PLCB1Q9NQ66 1216 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 APOBEC2Q9Y235 224 aaKnown RBP11.96□□□□□ -0.49
USP4-204ENST00000416417 NCKAP1Q9Y2A7 1128 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 FREM2Q5SZK8 3169 aa11.96□□□□□ -0.49
USP4-204ENST00000416417 FAM149AA5PLN7 773 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 FAM221BA6H8Z2 402 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 CBX4O00257 560 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 MED7O43513 233 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 GNA14O95837 355 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 IGLV3-25P01717 112 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 ASLP04424 464 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 WNT1P04628 370 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 CAPNS1P04632 268 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 SLC8A1P32418 973 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 CLDN6P56747 220 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 YWHAZP63104 245 aaKnown RBP11.96□□□□□ -0.5
USP4-204ENST00000416417 ECT2LQ008S8 904 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 ZBTB16Q05516 673 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 KCNJ12Q14500 433 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 TEAD4Q15561 434 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 POM121L1PQ3SYA9 428 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 TRIM65Q6PJ69 517 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 TMEM110Q86TL2 294 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 GATAD2AQ86YP4 633 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 CCDC117Q8IWD4 279 aaPredicted RBP11.96□□□□□ -0.5
USP4-204ENST00000416417 OR52K2Q8NGK3 314 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 OMDQ99983 421 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 FBRSQ9HAH7 460 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 SGK2Q9HBY8 427 aa11.96□□□□□ -0.5
USP4-204ENST00000416417 KIAA1522Q9P206 1035 aaPredicted RBP11.96□□□□□ -0.5
USP4-204ENST00000416417 TMEM131Q92545 1883 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 F5H5T6 163 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 FLRT2O43155 660 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 SART1O43290 800 aaKnown RBP11.95□□□□□ -0.5
USP4-204ENST00000416417 RNASEH1O60930 286 aaKnown RBP11.95□□□□□ -0.5
USP4-204ENST00000416417 ZNF883P0CG24 379 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 C7P10643 843 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 CTSKP43235 329 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 GRIA4P48058 902 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 NNTQ13423 1086 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 RNF219Q5W0B1 726 aaPredicted RBP11.95□□□□□ -0.5
USP4-204ENST00000416417 OR6B2Q6IFH4 312 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 CCNI2Q6ZMN8 369 aaPredicted RBP11.95□□□□□ -0.5
USP4-204ENST00000416417 DBX2Q6ZNG2 339 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 FAM183BPQ6ZVS7 135 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 GLRX5Q86SX6 157 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 IRF2BP1Q8IU81 584 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 CCAR2Q8N163 923 aaKnown RBP11.95□□□□□ -0.5
USP4-204ENST00000416417 C1orf131Q8NDD1 294 aaKnown RBP11.95□□□□□ -0.5
USP4-204ENST00000416417 OR14C36Q8NHC7 312 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 STK32AQ8WU08 396 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 PTPRN2Q92932 1015 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 RNF34Q969K3 372 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 IGSF8Q969P0 613 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 BTN2A3PQ96KV6 586 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 PRMT1Q99873 361 aaKnown RBP11.95□□□□□ -0.5
USP4-204ENST00000416417 THAP9Q9H5L6 903 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 AASDHPPTQ9NRN7 309 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 DDIT4Q9NX09 232 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 SNX10Q9Y5X0 201 aa11.95□□□□□ -0.5
USP4-204ENST00000416417 PLXNA2O75051 1894 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 EDDM13A0A1B0GTR0 161 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 A0A1W2PPC4 97 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 KCNU1A8MYU2 1149 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 MOCS3O95396 460 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 IL1BP01584 269 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 ERBB2P04626 1255 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 SRPRAP08240 638 aaKnown RBP11.94□□□□□ -0.5
USP4-204ENST00000416417 TFE3P19532 575 aaPredicted RBP11.94□□□□□ -0.5
USP4-204ENST00000416417 CCT8P50990 548 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 C21orf59P57076 290 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 PPP2CBP62714 309 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 PPP2CAP67775 309 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 NME3Q13232 169 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 EIF4EBP2Q13542 120 aaPredicted RBP11.94□□□□□ -0.5
USP4-204ENST00000416417 HSP90AA4PQ58FG1 418 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms