RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 CHSY1Q86X52 802 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 ZSCAN18Q8TBC5 510 aaPredicted RBP20.63■□□□□ 0.89
USP39-204ENST00000409766 CASP10Q92851 521 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 SRPK1Q96SB4 655 aaKnown RBP20.63■□□□□ 0.89
USP39-204ENST00000409766 FTHL17Q9BXU8 183 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 GBA3Q9H227 469 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 NMUR1Q9HB89 426 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 SFMBT1Q9UHJ3 866 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 PRG3Q9Y2Y8 225 aaPredicted RBP20.63■□□□□ 0.89
USP39-204ENST00000409766 COPEO14579 308 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 SRGAP2BP0DMP2 458 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 NIPAL4Q0D2K0 466 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 CRYMQ14894 314 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 TEX44Q53QW1 395 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 KCTD11Q693B1 232 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 MARK2Q7KZI7 788 aaKnown RBP20.63■□□□□ 0.89
USP39-204ENST00000409766 SCN4BQ8IWT1 228 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 DCP1BQ8IZD4 617 aaKnown RBP20.63■□□□□ 0.89
USP39-204ENST00000409766 VAT1Q99536 393 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 SIK2Q9H0K1 926 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 MANSC1Q9H8J5 431 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 TMEM161AQ9NX61 479 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 MKS1Q9NXB0 559 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 ABI2Q9NYB9 513 aaPredicted RBP20.63■□□□□ 0.89
USP39-204ENST00000409766 VWA8A3KMH1 1905 aa20.63■□□□□ 0.89
USP39-204ENST00000409766 ARVCFO00192 962 aa20.62■□□□□ 0.89
USP39-204ENST00000409766 CCR1P32246 355 aa20.62■□□□□ 0.89
USP39-204ENST00000409766 OLIG2Q13516 323 aa20.62■□□□□ 0.89
USP39-204ENST00000409766 ARTNQ5T4W7 220 aa20.62■□□□□ 0.89
USP39-204ENST00000409766 LRRC8DQ7L1W4 858 aa20.62■□□□□ 0.89
USP39-204ENST00000409766 PTPRN2Q92932 1015 aa20.62■□□□□ 0.89
USP39-204ENST00000409766 FUBP3Q96I24 572 aaKnown RBP eCLIP20.62■□□□□ 0.89
USP39-204ENST00000409766 CELF6Q96J87 481 aaKnown RBP20.62■□□□□ 0.89
USP39-204ENST00000409766 AGAP3Q96P47 875 aa20.62■□□□□ 0.89
USP39-204ENST00000409766 HMX1Q9NP08 348 aaPredicted RBP20.62■□□□□ 0.89
USP39-204ENST00000409766 ERI2A8K979 691 aaKnown RBP20.61■□□□□ 0.89
USP39-204ENST00000409766 MSI1O43347 362 aaKnown RBP20.61■□□□□ 0.89
USP39-204ENST00000409766 PAGE1O75459 146 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 COL6A1P12109 1028 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 CNTFP26441 200 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 HOXC13P31276 330 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 ZNF33AQ06730 810 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 MROH9Q5TGP6 573 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 MANEALQ5VSG8 457 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 RWDD4Q6NW29 188 aaKnown RBP20.61■□□□□ 0.89
USP39-204ENST00000409766 OR52K1Q8NGK4 314 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 THOC1Q96FV9 657 aaKnown RBP20.61■□□□□ 0.89
USP39-204ENST00000409766 FAM193BQ96PV7 902 aaPredicted RBP20.61■□□□□ 0.89
USP39-204ENST00000409766 PLLPQ9Y342 182 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.61■□□□□ 0.89
USP39-204ENST00000409766 A0A1W2PQH9 124 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 GNRH1P01148 92 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 BNIP1Q12981 228 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 PPP2R5DQ14738 602 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 NFE2Q16621 373 aaPredicted RBP20.61■□□□□ 0.89
USP39-204ENST00000409766 TIFABQ6ZNK6 161 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 ANKLE1Q8NAG6 615 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 TEKT5Q96M29 485 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 ALG13Q9NP73 1137 aaKnown RBP20.61■□□□□ 0.89
USP39-204ENST00000409766 OSER1Q9NX31 292 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 PLXNA3P51805 1871 aa20.61■□□□□ 0.89
USP39-204ENST00000409766 SYN3O14994 580 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 TADA2AO75478 443 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 POLBP06746 335 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 SELPP16109 830 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 HTR7P34969 479 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 MAP2K2P36507 400 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 CCDC15Q0P6D6 951 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 VARS2Q5ST30 1063 aaKnown RBP20.6■□□□□ 0.89
USP39-204ENST00000409766 ITPRIPL1Q6GPH6 555 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 CDKL2Q92772 493 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 C8orf48Q96LL4 319 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 MLPHQ9BV36 600 aaPredicted RBP20.6■□□□□ 0.89
USP39-204ENST00000409766 IQCGQ9H095 443 aaKnown RBP20.6■□□□□ 0.89
USP39-204ENST00000409766 CASS4Q9NQ75 786 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 SCML2Q9UQR0 700 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 USH1CQ9Y6N9 552 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 USP12O75317 370 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 RASSF9O75901 435 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 NFKB1P19838 968 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 SERPINB4P48594 390 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 NAB1Q13506 487 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 GPNMBQ14956 572 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 ARHGAP12Q8IWW6 846 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 NUP93Q8N1F7 819 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 STKLD1Q8NE28 680 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 C10orf82Q8WW14 230 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 FCRL2Q96LA5 508 aaPredicted RBP20.6■□□□□ 0.89
USP39-204ENST00000409766 TSGA13Q96PP4 275 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 SLC40A1Q9NP59 571 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 SLC17A6Q9P2U8 582 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 NUDT5Q9UKK9 219 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 PHF24Q9UPV7 400 aa20.6■□□□□ 0.89
USP39-204ENST00000409766 ARHGAP42A6NI28 874 aa20.59■□□□□ 0.89
USP39-204ENST00000409766 KCNU1A8MYU2 1149 aa20.59■□□□□ 0.89
USP39-204ENST00000409766 FGF10O15520 208 aaPredicted RBP20.59■□□□□ 0.89
USP39-204ENST00000409766 NBNO60934 754 aa20.59■□□□□ 0.89
USP39-204ENST00000409766 JCHAINP01591 159 aa20.59■□□□□ 0.89
USP39-204ENST00000409766 GPR15P49685 360 aa20.59■□□□□ 0.89
USP39-204ENST00000409766 VEGFBP49765 207 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms