RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 USP18Q9UMW8 372 aa20.91■□□□□ 0.94
PTCD3-202ENST00000409326 NEU3Q9UQ49 428 aa20.91■□□□□ 0.94
PTCD3-202ENST00000409326 PCDHA13Q9Y5I0 950 aa20.91■□□□□ 0.94
PTCD3-202ENST00000409326 FANCMQ8IYD8 2048 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.9■□□□□ 0.94
PTCD3-202ENST00000409326 FAM72CH0Y354 149 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 TIMM44O43615 452 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 LRIG2O94898 1065 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 IPO7O95373 1038 aaKnown RBP20.9■□□□□ 0.94
PTCD3-202ENST00000409326 CXCL12P48061 93 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 OXCT1P55809 520 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 SATB1Q01826 763 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 ZNF177Q13360 481 aaPredicted RBP20.9■□□□□ 0.94
PTCD3-202ENST00000409326 SLC12A1Q13621 1099 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 TCEAL1Q15170 157 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 ANGPT1Q15389 498 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 FUT11Q495W5 492 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 ERMARDQ5T6L9 678 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 FAM72AQ5TYM5 149 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 FAM72DQ6L9T8 149 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 SYT13Q7L8C5 426 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 FAM72BQ86X60 149 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 PSTKQ8IV42 348 aaKnown RBP20.9■□□□□ 0.94
PTCD3-202ENST00000409326 MAML2Q8IZL2 1156 aaPredicted RBP20.9■□□□□ 0.94
PTCD3-202ENST00000409326 PYROXD2Q8N2H3 581 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 ALLCQ8N6M5 410 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 TBC1D31Q96DN5 1066 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 SNRNP25Q9BV90 132 aaKnown RBP20.9■□□□□ 0.94
PTCD3-202ENST00000409326 CIPCQ9C0C6 399 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 ZDHHC4Q9NPG8 344 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 MMP17Q9ULZ9 603 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 AP4E1Q9UPM8 1137 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 TBC1D30Q9Y2I9 924 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 HCN4Q9Y3Q4 1203 aa20.9■□□□□ 0.94
PTCD3-202ENST00000409326 NPC1O15118 1278 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 PROSCO94903 275 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 KLF8O95600 359 aaPredicted RBP20.89■□□□□ 0.93
PTCD3-202ENST00000409326 HNRNPLP14866 589 aaKnown RBP eCLIP20.89■□□□□ 0.93
PTCD3-202ENST00000409326 MRE11P49959 708 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 SEMA3BQ13214 749 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 DMC1Q14565 340 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 E2F5Q15329 346 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 MBLAC2Q68D91 279 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 CCDC33Q8N5R6 958 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 TXNDC5Q8NBS9 432 aaKnown RBP20.89■□□□□ 0.93
PTCD3-202ENST00000409326 PRSS33Q8NF86 280 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 EPAS1Q99814 870 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 RETREG1Q9H6L5 497 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 GPATCH2LQ9NWQ4 482 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 ZNF212Q9UDV6 495 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 FBXO4Q9UKT5 387 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 INTS6Q9UL03 887 aaKnown RBP20.89■□□□□ 0.93
PTCD3-202ENST00000409326 MUC6Q6W4X9 2439 aa20.89■□□□□ 0.93
PTCD3-202ENST00000409326 CACNA1HO95180 2353 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 NYNRINQ9P2P1 1898 aaKnown RBP20.88■□□□□ 0.93
PTCD3-202ENST00000409326 ADAM23O75077 832 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 MOCS3O95396 460 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 TCF4P15884 667 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 IL1R2P27930 398 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 HOXC13P31276 330 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 MAN1A1P33908 653 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 CSKP41240 450 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 SLC25A11Q02978 314 aaKnown RBP20.88■□□□□ 0.93
PTCD3-202ENST00000409326 PLEKHG6Q3KR16 790 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 PITRM1Q5JRX3 1037 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 EOGTQ5NDL2 527 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 RWDD4Q6NW29 188 aaKnown RBP20.88■□□□□ 0.93
PTCD3-202ENST00000409326 TFAP2DQ7Z6R9 452 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 SETD3Q86TU7 594 aaPredicted RBP20.88■□□□□ 0.93
PTCD3-202ENST00000409326 TTC17Q96AE7 1141 aa20.88■□□□□ 0.93
PTCD3-202ENST00000409326 DHX35Q9H5Z1 703 aaKnown RBP20.88■□□□□ 0.93
PTCD3-202ENST00000409326 THAP10Q9P2Z0 257 aaPredicted RBP20.88■□□□□ 0.93
PTCD3-202ENST00000409326 REXO2Q9Y3B8 237 aaKnown RBP20.88■□□□□ 0.93
PTCD3-202ENST00000409326 SGK1O00141 431 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 ATP5BP06576 529 aaKnown RBP20.87■□□□□ 0.93
PTCD3-202ENST00000409326 RHOCP08134 193 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 RHOQP17081 205 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 POLR2EP19388 210 aaKnown RBP20.87■□□□□ 0.93
PTCD3-202ENST00000409326 NTSR1P30989 418 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 HTR7P34969 479 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 ARHGAP25P42331 645 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 PLK1P53350 603 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 TCF15Q12870 199 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 CA9Q16790 459 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 BOLA3Q53S33 107 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 C6orf118Q5T5N4 469 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 NLRP14Q86W24 1093 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 CHPFQ8IZ52 775 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 APCDD1Q8J025 514 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 OR52K2Q8NGK3 314 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 SORCS1Q8WY21 1168 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 PPP1R9BQ96SB3 815 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 ACOX2Q99424 681 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 POLR3BQ9NW08 1133 aaPredicted RBP20.87■□□□□ 0.93
PTCD3-202ENST00000409326 TMEM248Q9NWD8 314 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 SLC8A2Q9UPR5 921 aa20.87■□□□□ 0.93
PTCD3-202ENST00000409326 EML5Q05BV3 1969 aa20.86■□□□□ 0.93
PTCD3-202ENST00000409326 A0A0A6YYK5 440 aaPredicted RBP20.86■□□□□ 0.93
PTCD3-202ENST00000409326 K7ESF4 209 aa20.86■□□□□ 0.93
PTCD3-202ENST00000409326 CREB3O43889 395 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms