RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 RPP25Q9BUL9 199 aaKnown RBP18.59■□□□□ 0.57
SDC1-203ENST00000403076 TRMT61BQ9BVS5 477 aaKnown RBP18.59■□□□□ 0.57
SDC1-203ENST00000403076 BBS2Q9BXC9 721 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 RRAGDQ9NQL2 400 aaPredicted RBP18.59■□□□□ 0.57
SDC1-203ENST00000403076 TMEM248Q9NWD8 314 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 PLK2Q9NYY3 685 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 LIMD1Q9UGP4 676 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 NEU3Q9UQ49 428 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 MFHAS1Q9Y4C4 1052 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 H0Y626 953 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 PDE2AO00408 941 aaPredicted RBP18.58■□□□□ 0.56
SDC1-203ENST00000403076 OR1E1P30953 314 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 GDI1P31150 447 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 FCHO2Q0JRZ9 810 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 NCBP2-AS2Q69YL0 99 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 NPNTQ6UXI9 565 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 CHST9Q7L1S5 443 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 NLRP14Q86W24 1093 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 LZTR1Q8N653 840 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 TTC13Q8NBP0 860 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 ATP2A3Q93084 1043 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 ASIC4Q96FT7 647 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 AP1M1Q9BXS5 423 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 EBF3Q9H4W6 596 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 RETREG1Q9H6L5 497 aa18.58■□□□□ 0.56
SDC1-203ENST00000403076 GOLGA6L10A0A0M3HER8 536 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 WASH4PA8MWX3 477 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 ANHXE9PGG2 379 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 NEDD8-MDP1E9PL57 170 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 APOC4-APOC2K7ER74 178 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 GFRA2O00451 464 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 SLC34A2O95436 690 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 ADH1CP00326 375 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 APOC2P02655 101 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 IL9P15248 144 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 ARSAP15289 507 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 MAPKAPK2P49137 400 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 NR1H3Q13133 447 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 KLF1Q13351 362 aaPredicted RBP18.57■□□□□ 0.56
SDC1-203ENST00000403076 PAFAH1B3Q15102 231 aaKnown RBP18.57■□□□□ 0.56
SDC1-203ENST00000403076 DHCR24Q15392 516 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 ARTNQ5T4W7 220 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 RHBDF2Q6PJF5 856 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 RSAD2Q8WXG1 361 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 CELF6Q96J87 481 aaKnown RBP18.57■□□□□ 0.56
SDC1-203ENST00000403076 FAM83CQ9BQN1 747 aa18.57■□□□□ 0.56
SDC1-203ENST00000403076 SAE1Q9UBE0 346 aaPredicted RBP18.57■□□□□ 0.56
SDC1-203ENST00000403076 CHADO15335 359 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 MFSD11O43934 449 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 LUC7L3O95232 432 aaKnown RBP18.56■□□□□ 0.56
SDC1-203ENST00000403076 MAP3K6O95382 1288 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 NR2C2P49116 596 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 OTUD4Q01804 1114 aaKnown RBP18.56■□□□□ 0.56
SDC1-203ENST00000403076 GBE1Q04446 702 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 GAD2Q05329 585 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 CDH18Q13634 790 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 AAK1Q2M2I8 961 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 MPP7Q5T2T1 576 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 C6orf118Q5T5N4 469 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 BZW1Q7L1Q6 419 aaKnown RBP18.56■□□□□ 0.56
SDC1-203ENST00000403076 ZNF354CQ86Y25 554 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 MFN1Q8IWA4 741 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 ZDHHC14Q8IZN3 488 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 CPA6Q8N4T0 437 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 NETO2Q8NC67 525 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 MNS1Q8NEH6 495 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 ACTL9Q8TC94 416 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 C1orf54Q8WWF1 131 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 FAM118BQ9BPY3 351 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 BRD9Q9H8M2 597 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 NDFIP2Q9NV92 336 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 THEGQ9P2T0 379 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 SZT2Q5T011 3432 aa18.56■□□□□ 0.56
SDC1-203ENST00000403076 DFFAO00273 331 aa18.55■□□□□ 0.56
SDC1-203ENST00000403076 CYP17A1P05093 508 aa18.55■□□□□ 0.56
SDC1-203ENST00000403076 RHOCP08134 193 aa18.55■□□□□ 0.56
SDC1-203ENST00000403076 ADH5P11766 374 aa18.55■□□□□ 0.56
SDC1-203ENST00000403076 PECAM1P16284 738 aaPredicted RBP18.55■□□□□ 0.56
SDC1-203ENST00000403076 HOXD9P28356 352 aaPredicted RBP18.55■□□□□ 0.56
SDC1-203ENST00000403076 FYB2Q5VWT5 728 aa18.55■□□□□ 0.56
SDC1-203ENST00000403076 CCDC33Q8N5R6 958 aa18.55■□□□□ 0.56
SDC1-203ENST00000403076 NXPE3Q969Y0 559 aa18.55■□□□□ 0.56
SDC1-203ENST00000403076 R3HDM2Q9Y2K5 976 aaKnown RBP18.55■□□□□ 0.56
SDC1-203ENST00000403076 REV3LO60673 3130 aa18.55■□□□□ 0.56
SDC1-203ENST00000403076 MCF2LO15068 1137 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 RAMP2O60895 175 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 TYRP14679 529 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 EIF3EP60228 445 aaKnown RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 TNK2Q07912 1038 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 SLC10A2Q12908 348 aaPredicted RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 SNX1Q13596 522 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 RUNX3Q13761 415 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 SETD3Q86TU7 594 aaPredicted RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 UMODL1-AS1Q8N2C9 162 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 NPWQ8N729 165 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 CEP112Q8N8E3 955 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 NAT16Q8N8M0 369 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 TTC8Q8TAM2 541 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 ATG4AQ8WYN0 398 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 ECT2Q9H8V3 914 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms