RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SLC11A2P49281 568 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 GZMKP49863 264 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 RBM5P52756 815 aaKnown RBP eCLIP4.36□□□□□ -1.71
HMGB1-204ENST00000399489 SLC12A3P55017 1021 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 AKAP17AQ02040 695 aaKnown RBP4.36□□□□□ -1.71
HMGB1-204ENST00000399489 MEF2AQ02078 507 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-204ENST00000399489 PDCLQ13371 301 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 TDGQ13569 410 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 TNFAIP1Q13829 316 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 IRF3Q14653 427 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 GRM4Q14833 912 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 RPS6KA2Q15349 733 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 FAM214AQ32MH5 1076 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 ZNF628Q5EBL2 1059 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 ZNF484Q5JVG2 852 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 FAXCQ5TGI0 409 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 STRIP1Q5VSL9 837 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 ADALQ6DHV7 355 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 DGAT2L7PQ6IED9 249 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 SLC30A9Q6PML9 568 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 PCSK4Q6UW60 755 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 KDELC1Q6UW63 502 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 PET117Q6UWS5 81 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 Q6ZPA2 131 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 RHOUQ7L0Q8 258 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 ADGRA1Q86SQ6 560 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 CNTROBQ8N137 903 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 SLC15A4Q8N697 577 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 C10orf53Q8N6V4 93 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 SUPT20HQ8NEM7 779 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 BICD2Q8TD16 824 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 MED15Q96RN5 788 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 SOX7Q9BT81 388 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 NDC1Q9BTX1 674 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 FUT8Q9BYC5 575 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 KCNH6Q9H252 994 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 MMADHCQ9H3L0 296 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-204ENST00000399489 THAP9Q9H5L6 903 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 RIOX1Q9H6W3 641 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 FANCFQ9NPI8 374 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 SNTG1Q9NSN8 517 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 CNOT7Q9UIV1 285 aaKnown RBP4.36□□□□□ -1.71
HMGB1-204ENST00000399489 CAPN11Q9UMQ6 739 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 ATAD2BQ9ULI0 1458 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 PES1O00541 588 aaKnown RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 RNASET2O00584 256 aaKnown RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PRPSAP2O60256 369 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PHF2O75151 1096 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 GUCY1B2O75343 617 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 GPR32O75388 356 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 STC2O76061 302 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 DDCP20711 480 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SLC5A2P31639 672 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 ICAM3P32942 547 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 GPC3P51654 580 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 HSD17B4P51659 736 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 TKTL1P51854 596 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MXRA7P84157 204 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MRPL49Q13405 166 aaKnown RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MTM1Q13496 603 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MED22Q15528 200 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 NFIL3Q16649 462 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 HECTD2Q5U5R9 776 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 C1QL3Q5VWW1 255 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 FCRL6Q6DN72 434 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 RINT1Q6NUQ1 792 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 TAS1R1Q7RTX1 841 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 CCDC186Q7Z3E2 898 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 RASGRP3Q8IV61 690 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 CCDC105Q8IYK2 499 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 POMGNT2Q8NAT1 580 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 POGLUT1Q8NBL1 392 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 OR6J1Q8NGC5 347 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 FIBINQ8TAL6 211 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 FBXO30Q8TB52 745 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 FAM162AQ96A26 154 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 RMDN1Q96DB5 314 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SIPA1Q96FS4 1042 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 C16orf45Q96MC5 204 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 NTPCRQ9BSD7 190 aaKnown RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 KLHL4Q9C0H6 718 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SLAMF7Q9NQ25 335 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MARCH4Q9P2E8 410 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SLC25A10Q9UBX3 287 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 LAMP5Q9UJQ1 280 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 CNTN6Q9UQ52 1028 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SMC3Q9UQE7 1217 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 TBC1D30Q9Y2I9 924 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 A0A1W2PR48 441 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 A4D1N5 150 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 CCDC151A5D8V7 595 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 OR2W5A6NFC9 320 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 URADA6NGE7 173 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PRSS29PA6NIE9 313 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 GRXCR1A8MXD5 290 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 TSPAN4O14817 238 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 DNAJB5O75953 348 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 UNC5CO95185 931 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PDE8BO95263 885 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 C22orf31O95567 290 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms