RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 AIF1P55008 147 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 ZNF234Q14588 700 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 HEATR6Q6AI08 1181 aaKnown RBP22.38■■□□□ 1.17
CLN3-207ENST00000395653 CXorf57Q6NSI4 855 aaKnown RBP22.38■■□□□ 1.17
CLN3-207ENST00000395653 SLFN11Q7Z7L1 901 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 TC2NQ8N9U0 490 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 TTC17Q96AE7 1141 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 FAM122AQ96E09 287 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 SEMA4AQ9H3S1 761 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 INTS6Q9UL03 887 aaKnown RBP22.38■■□□□ 1.17
CLN3-207ENST00000395653 STON1Q9Y6Q2 735 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 DMDP11532 3685 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.37■■□□□ 1.17
CLN3-207ENST00000395653 ALDH1A2O94788 518 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 MOCS3O95396 460 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 CYP1A2P05177 515 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 DLDP09622 509 aaKnown RBP22.37■■□□□ 1.17
CLN3-207ENST00000395653 CNR2P34972 360 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 IL12RB1P42701 662 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 GALCP54803 685 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 ZNF252P-AS1Q0IIN9 211 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 ZNF177Q13360 481 aaPredicted RBP22.37■■□□□ 1.17
CLN3-207ENST00000395653 PLEKHG6Q3KR16 790 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 PITRM1Q5JRX3 1037 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 ARTNQ5T4W7 220 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 RASSF3Q86WH2 238 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 SORCS1Q8WY21 1168 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 CCDC42Q96M95 316 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 PPP1R9BQ96SB3 815 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 NHEJ1Q9H9Q4 299 aaPredicted RBP22.37■■□□□ 1.17
CLN3-207ENST00000395653 PPARGC1AQ9UBK2 798 aaKnown RBP22.37■■□□□ 1.17
CLN3-207ENST00000395653 OR12D3Q9UGF7 316 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 TBC1D30Q9Y2I9 924 aa22.37■■□□□ 1.17
CLN3-207ENST00000395653 A0A1W2PQF6 199 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 SRGAP2O75044 1071 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 CNTN5O94779 1100 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 ASLP04424 464 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 CSKP41240 450 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 PXNP49023 591 aaPredicted RBP22.36■■□□□ 1.17
CLN3-207ENST00000395653 PTPRNQ16849 979 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 ALFQ53S48 1182 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 EFHC2Q5JST6 749 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 MANEALQ5VSG8 457 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 ANO7Q6IWH7 933 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 SCYL2Q6P3W7 929 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 MYO18AQ92614 2054 aaKnown RBP22.36■■□□□ 1.17
CLN3-207ENST00000395653 PHOX2BQ99453 314 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 NCAPGQ9BPX3 1015 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 TRIM7Q9C029 511 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 ZYG11BQ9C0D3 744 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 CD248Q9HCU0 757 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 PLA2G4CQ9UP65 541 aa22.36■■□□□ 1.17
CLN3-207ENST00000395653 MUC22E2RYF6 1773 aaPredicted RBP22.35■■□□□ 1.17
CLN3-207ENST00000395653 TCRBV21S2A2A0A5A6 115 aa22.35■■□□□ 1.17
CLN3-207ENST00000395653 WASH3PC4AMC7 463 aa22.35■■□□□ 1.17
CLN3-207ENST00000395653 AXIN1O15169 862 aa22.35■■□□□ 1.17
CLN3-207ENST00000395653 RNF8O76064 485 aa22.35■■□□□ 1.17
CLN3-207ENST00000395653 PLK1P53350 603 aa22.35■■□□□ 1.17
CLN3-207ENST00000395653 CYB5D2Q8WUJ1 264 aa22.35■■□□□ 1.17
CLN3-207ENST00000395653 RETREG1Q9H6L5 497 aa22.35■■□□□ 1.17
CLN3-207ENST00000395653 MPP6Q9NZW5 540 aa22.35■■□□□ 1.17
CLN3-207ENST00000395653 STARD3Q14849 445 aa22.34■■□□□ 1.17
CLN3-207ENST00000395653 ACAP1Q15027 740 aa22.34■■□□□ 1.17
CLN3-207ENST00000395653 SERPINA13PQ6UXR4 307 aa22.34■■□□□ 1.17
CLN3-207ENST00000395653 SETD3Q86TU7 594 aaPredicted RBP22.34■■□□□ 1.17
CLN3-207ENST00000395653 APCDD1Q8J025 514 aa22.34■■□□□ 1.17
CLN3-207ENST00000395653 MDGA1Q8NFP4 955 aa22.34■■□□□ 1.17
CLN3-207ENST00000395653 CTNNBL1Q8WYA6 563 aaPredicted RBP22.34■■□□□ 1.17
CLN3-207ENST00000395653 ARHGEF26Q96DR7 871 aa22.34■■□□□ 1.17
CLN3-207ENST00000395653 NUP85Q9BW27 656 aa22.34■■□□□ 1.17
CLN3-207ENST00000395653 FZD10Q9ULW2 581 aa22.34■■□□□ 1.17
CLN3-207ENST00000395653 FAM72CH0Y354 149 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 H2AFZP0C0S5 128 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 MZF1P28698 734 aaPredicted RBP22.33■■□□□ 1.17
CLN3-207ENST00000395653 L1CAMP32004 1257 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 FNDC3BQ53EP0 1204 aaKnown RBP22.33■■□□□ 1.17
CLN3-207ENST00000395653 C6orf118Q5T5N4 469 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 FAM72AQ5TYM5 149 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 FAM72DQ6L9T8 149 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 KIAA1211LQ6NV74 962 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 H2AFVQ71UI9 128 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 FAM72BQ86X60 149 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 ARFGAP1Q8N6T3 406 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 KDM1BQ8NB78 822 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 OR52K2Q8NGK3 314 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 NKD2Q969F2 451 aaPredicted RBP22.33■■□□□ 1.17
CLN3-207ENST00000395653 ALG14Q96F25 216 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 EPC1Q9H2F5 836 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 TMEM245Q9H330 911 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 ZNF212Q9UDV6 495 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 RAD54BQ9Y620 910 aa22.33■■□□□ 1.17
CLN3-207ENST00000395653 VPS13AQ96RL7 3174 aa22.33■■□□□ 1.16
CLN3-207ENST00000395653 LRCH4O75427 683 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 LRIG2O94898 1065 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 RHOCP08134 193 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 SRPRAP08240 638 aaKnown RBP22.32■■□□□ 1.16
CLN3-207ENST00000395653 PRKCHP24723 683 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 SULT2A1Q06520 285 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 PIGHQ14442 188 aaPredicted RBP22.32■■□□□ 1.16
CLN3-207ENST00000395653 TFAP2DQ7Z6R9 452 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms