RNA–Protein interactions for RNA: ENST00000394820.8

NFKB1-202, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NFKB1, Length 3,693 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-202ENST00000394820 JCHAINP01591 159 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 BPGMP07738 259 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 ICAM3P32942 547 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 CDH15P55291 814 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 NSUN2Q08J23 767 aaKnown RBP eCLIP13.53□□□□□ -0.24
NFKB1-202ENST00000394820 CYLC2Q14093 348 aaPredicted RBP13.53□□□□□ -0.24
NFKB1-202ENST00000394820 PTK2BQ14289 1009 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 ZNF460Q14592 562 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 ZNF781Q8N8C0 355 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 CLEC4CQ8WTT0 213 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 EDEM1Q92611 657 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 RNF157Q96PX1 679 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 PAIP1Q9H074 479 aaKnown RBP13.53□□□□□ -0.24
NFKB1-202ENST00000394820 COG4Q9H9E3 785 aa13.53□□□□□ -0.24
NFKB1-202ENST00000394820 ARHGAP10A1A4S6 786 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 DYNC1LI2O43237 492 aaPredicted RBP13.52□□□□□ -0.24
NFKB1-202ENST00000394820 CHRNGP07510 517 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 PSMC3P17980 439 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 STX1BP61266 288 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 PRKD1Q15139 912 aaPredicted RBP13.52□□□□□ -0.24
NFKB1-202ENST00000394820 SURF1Q15526 300 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 TARBP2Q15633 366 aaKnown RBP13.52□□□□□ -0.24
NFKB1-202ENST00000394820 NEDD8Q15843 81 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 FAM47CQ5HY64 1035 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 OTUD3Q5T2D3 398 aaPredicted RBP13.52□□□□□ -0.24
NFKB1-202ENST00000394820 FRMD7Q6ZUT3 714 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 NAT8LQ8N9F0 302 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 TFB1MQ8WVM0 346 aaKnown RBP13.52□□□□□ -0.24
NFKB1-202ENST00000394820 LENG1Q96BZ8 264 aaPredicted RBP13.52□□□□□ -0.24
NFKB1-202ENST00000394820 VCPIP1Q96JH7 1222 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 ELMO2Q96JJ3 720 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 SIKE1Q9BRV8 207 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 SARS2Q9NP81 518 aaKnown RBP13.52□□□□□ -0.24
NFKB1-202ENST00000394820 SNTG2Q9NY99 539 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 KANSL3Q9P2N6 904 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 PSAT1Q9Y617 370 aa13.52□□□□□ -0.24
NFKB1-202ENST00000394820 SMAPO00193 183 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 RNF103O00237 685 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 GLRA3O75311 464 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 TGFB3P10600 412 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 COX4I1P13073 169 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 ARF4P18085 180 aaPredicted RBP13.52□□□□□ -0.25
NFKB1-202ENST00000394820 ASPAP45381 313 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 CHN2P52757 468 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 ADARP55265 1226 aaKnown RBP13.52□□□□□ -0.25
NFKB1-202ENST00000394820 TSHZ1Q6ZSZ6 1077 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 LPCAT2Q7L5N7 544 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 NET1Q7Z628 596 aaPredicted RBP13.52□□□□□ -0.25
NFKB1-202ENST00000394820 FAM81AQ8TBF8 368 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 NKD2Q969F2 451 aaPredicted RBP13.52□□□□□ -0.25
NFKB1-202ENST00000394820 CCDC138Q96M89 665 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 DPP3Q9NY33 737 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 POMPQ9Y244 141 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 HEMK1Q9Y5R4 338 aaPredicted RBP13.52□□□□□ -0.25
NFKB1-202ENST00000394820 CNTRLQ7Z7A1 2325 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 ATG7O95352 703 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 LGALS2P05162 132 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 C9orf131Q5VYM1 1079 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 PLD5Q8N7P1 536 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 AGAP2Q99490 1192 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 OSMRQ99650 979 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 CIB1Q99828 191 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 ADARB2Q9NS39 739 aaKnown RBP13.52□□□□□ -0.25
NFKB1-202ENST00000394820 CDH22Q9UJ99 828 aa13.52□□□□□ -0.25
NFKB1-202ENST00000394820 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.51□□□□□ -0.25
NFKB1-202ENST00000394820 SERPINE1P05121 402 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 CCR3P51677 355 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 PTP4A2Q12974 167 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 CSHL1Q14406 222 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 BOLA3Q53S33 107 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 MAP1SQ66K74 1059 aaPredicted RBP13.51□□□□□ -0.25
NFKB1-202ENST00000394820 GRAMD4Q6IC98 578 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.51□□□□□ -0.25
NFKB1-202ENST00000394820 KYQ8NBH2 561 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 SLC35B2Q8TB61 432 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 PCDHAC1Q9H158 963 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 UPF3AQ9H1J1 476 aaKnown RBP13.51□□□□□ -0.25
NFKB1-202ENST00000394820 EGFL7Q9UHF1 273 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 STYXL1Q9Y6J8 313 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 PPEF2O14830 753 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 SETSIPP0DME0 302 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 SPRP35270 261 aaPredicted RBP13.51□□□□□ -0.25
NFKB1-202ENST00000394820 AP3M2P53677 418 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 CTBP1Q13363 440 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 SEL1L3Q68CR1 1132 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 LRRC8BQ6P9F7 803 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 CNDP1Q96KN2 507 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 SEPHS2Q99611 448 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 SPATA16Q9BXB7 569 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 C20orf27Q9GZN8 174 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 ING2Q9H160 280 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 CXCL16Q9H2A7 254 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 SIX4Q9UIU6 781 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 CDY2AQ9Y6F7 541 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 CDY1Q9Y6F8 540 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 ADGRA2Q96PE1 1338 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 H3BRB1 525 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 TK2O00142 265 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 MAGEB3O15480 346 aa13.51□□□□□ -0.25
NFKB1-202ENST00000394820 XPOTO43592 962 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms