RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ZSCAN5DPP0CG00 497 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 GJA1P17302 382 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 MIPP30301 263 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 TUFMP49411 452 aaKnown RBP14.71□□□□□ -0.06
HMGA1-203ENST00000374116 USP46P62068 366 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 SMARCB1Q12824 385 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 SMTNL2Q2TAL5 461 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 ANKRD20A2Q5SQ80 823 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 FAM102AQ5T9C2 384 aaPredicted RBP14.71□□□□□ -0.06
HMGA1-203ENST00000374116 RNASEH2BQ5TBB1 312 aaKnown RBP14.71□□□□□ -0.06
HMGA1-203ENST00000374116 ANKRD20A1Q5TYW2 823 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 ANKRD20A3Q5VUR7 823 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 PMF1Q6P1K2 205 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 FAM183BPQ6ZVS7 135 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 CYP4V2Q6ZWL3 525 aaPredicted RBP14.71□□□□□ -0.06
HMGA1-203ENST00000374116 KCTD6Q8NC69 237 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 C2orf15Q8WU43 125 aaKnown RBP14.71□□□□□ -0.06
HMGA1-203ENST00000374116 SMG7Q92540 1137 aaKnown RBP14.71□□□□□ -0.06
HMGA1-203ENST00000374116 HAUS1Q96CS2 278 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 PIWIL1Q96J94 861 aaKnown RBP14.71□□□□□ -0.06
HMGA1-203ENST00000374116 CORO1BQ9BR76 489 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 S1PR5Q9H228 398 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 PIDD1Q9HB75 910 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 ARHGEF3Q9NR81 526 aa14.71□□□□□ -0.06
HMGA1-203ENST00000374116 DNMT3BQ9UBC3 853 aaKnown RBP14.71□□□□□ -0.06
HMGA1-203ENST00000374116 NOTCH4Q99466 2003 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 ENO4A6NNW6 628 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 SRGAP2BP0DMP2 458 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 ETS1P14921 441 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 GPD1P21695 349 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 SKIV2L2P42285 1042 aaKnown RBP14.7□□□□□ -0.06
HMGA1-203ENST00000374116 ABL2P42684 1182 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 RGS7P49802 495 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 PAPOLAP51003 745 aaKnown RBP14.7□□□□□ -0.06
HMGA1-203ENST00000374116 OTUD4Q01804 1114 aaKnown RBP14.7□□□□□ -0.06
HMGA1-203ENST00000374116 KCNT1Q5JUK3 1230 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 OLFML1Q6UWY5 402 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 DNAJB7Q7Z6W7 309 aaPredicted RBP14.7□□□□□ -0.06
HMGA1-203ENST00000374116 TBC1D1Q86TI0 1168 aaPredicted RBP14.7□□□□□ -0.06
HMGA1-203ENST00000374116 GALNT15Q8N3T1 639 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 ACTL9Q8TC94 416 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 C9orf72Q96LT7 481 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 PLCD4Q9BRC7 762 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 CNPY3Q9BT09 278 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 TMEM121Q9BTD3 319 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 DUSP16Q9BY84 665 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 PRKD2Q9BZL6 878 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 PHACTR1Q9C0D0 580 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 ZNF334Q9HCZ1 680 aaPredicted RBP14.7□□□□□ -0.06
HMGA1-203ENST00000374116 SAYSD1Q9NPB0 183 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 USP18Q9UMW8 372 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 ACTL7BQ9Y614 415 aa14.7□□□□□ -0.06
HMGA1-203ENST00000374116 DPYSL4O14531 572 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 NPR3P17342 541 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 MRPS35P82673 323 aaKnown RBP14.69□□□□□ -0.06
HMGA1-203ENST00000374116 PLD1Q13393 1074 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 ZC3H12AQ5D1E8 599 aaKnown RBP14.69□□□□□ -0.06
HMGA1-203ENST00000374116 ANKRD52Q8NB46 1076 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 SMRP1Q8NCR6 262 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 CFAP61Q8NHU2 1237 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 NDRG1Q92597 394 aaKnown RBP14.69□□□□□ -0.06
HMGA1-203ENST00000374116 PRMT1Q99873 361 aaKnown RBP14.69□□□□□ -0.06
HMGA1-203ENST00000374116 DZANK1Q9NVP4 752 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 ZDHHC7Q9NXF8 308 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 HESX1Q9UBX0 185 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 PCSK1NQ9UHG2 260 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 CD207Q9UJ71 328 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 ASB3Q9Y575 518 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 GREB1Q4ZG55 1949 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 GRXCR2A6NFK2 248 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 SLC38A8A6NNN8 435 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 APOC4-APOC2K7ER74 178 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 PDLIM1O00151 329 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 SMAPO00193 183 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 ALOX15BO15296 676 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 APOC2P02655 101 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 MYL4P12829 197 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 CCR2P41597 374 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 MAGEA11P43364 429 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 KCNQ1P51787 676 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 EPHB3P54753 998 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 SNX16P57768 344 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 DYNLT1P63172 113 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 BNIP1Q12981 228 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 NR1H3Q13133 447 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 TAF12Q16514 161 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 OR6B2Q6IFH4 312 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 VSTM1Q6UX27 236 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 CENPUQ71F23 418 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 ASRGL1Q7L266 308 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 RFX6Q8HWS3 928 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 RXFP2Q8WXD0 754 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 TCEAL4Q96EI5 215 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 ZNF512Q96ME7 567 aaPredicted RBP14.69□□□□□ -0.06
HMGA1-203ENST00000374116 PEBP4Q96S96 227 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 PPCSQ9HAB8 311 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 DMAP1Q9NPF5 467 aaPredicted RBP14.69□□□□□ -0.06
HMGA1-203ENST00000374116 DPP7Q9UHL4 492 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 NAALADL1Q9UQQ1 740 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 SH3BP1Q9Y3L3 701 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms