RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NT5C3BQ969T7 300 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 ADAM33Q9BZ11 813 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 FANCLQ9NW38 375 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 STAP1Q9ULZ2 295 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 ITIH6Q6UXX5 1313 aa22.39■■□□□ 1.18
CCDC28B-201ENST00000373602 A0A1B0GTW7 788 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 SIN3BO75182 1162 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 TPM2P07951 284 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 ACSL1P33121 698 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 PLK1P53350 603 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 ECT2LQ008S8 904 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 TTC31Q49AM3 519 aaPredicted RBP22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 SASS6Q6UVJ0 657 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 CIR1Q86X95 450 aaPredicted RBP22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 XYLT1Q86Y38 959 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 DHX40Q8IX18 779 aaKnown RBP22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 MINDY1Q8N5J2 469 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 IGSF8Q969P0 613 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 CNTNAP3BQ96NU0 1288 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 RPRD1AQ96P16 312 aaPredicted RBP22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 CNTNAP3Q9BZ76 1288 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 ANO10Q9NW15 660 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 HS3ST4Q9Y661 456 aa22.39■■□□□ 1.17
CCDC28B-201ENST00000373602 TARSL2A2RTX5 802 aaKnown RBP22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 UPK3BL1B0FP48 263 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 UPK3BL2E5RIL1 263 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 OPHN1O60890 802 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 PAGE1O75459 146 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 PDGFRAP16234 1089 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 CXCR3P49682 368 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 KLK7P49862 253 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 OXCT1P55809 520 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 RNASE9P60153 205 aaKnown RBP22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 SEMA3BQ13214 749 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 C5orf22Q49AR2 442 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 FKBP15Q5T1M5 1219 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 C9orf64Q5T6V5 341 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 CXorf57Q6NSI4 855 aaKnown RBP22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 HDDC3Q8N4P3 179 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 ZCCHC9Q8N567 271 aaKnown RBP22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 DEFB124Q8NES8 71 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 C1orf216Q8TAB5 229 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 PGAP3Q96FM1 320 aaPredicted RBP22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 BTBD1Q9H0C5 482 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 C6orf106Q9H6K1 298 aaPredicted RBP22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 PIGVQ9NUD9 493 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 DNAAF2Q9NVR5 837 aaKnown RBP22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 ARHGEF38Q9NXL2 777 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 SLCO3A1Q9UIG8 710 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 VANGL2Q9ULK5 521 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 SCML1Q9UN30 329 aa22.38■■□□□ 1.17
CCDC28B-201ENST00000373602 EDDM13A0A1B0GTR0 161 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 TTC34A8MYJ7 566 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 MMEP08473 750 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 TFE3P19532 575 aaPredicted RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 MZF1P28698 734 aaPredicted RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 SULT1E1P49888 294 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 POLR2FP61218 127 aaKnown RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 NOMO3P69849 1222 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 CENPCQ03188 943 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 SULT2A1Q06520 285 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 STX1AQ16623 288 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 BRMS1LQ5PSV4 323 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 FAM102AQ5T9C2 384 aaPredicted RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 RNF219Q5W0B1 726 aaPredicted RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 USP30Q70CQ3 517 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 C14orf80Q86SX3 495 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 PIP4P1Q86T03 277 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 ZNF677Q86XU0 584 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 MSANTD4Q8NCY6 345 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 OR2I1PQ8NGU4 316 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 MIR1-1HGQ9H1L0 117 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 PABPC3Q9H361 631 aaKnown RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 SGK2Q9HBY8 427 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 FAM207AQ9NSI2 230 aaPredicted RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 TMEM51Q9NW97 253 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 EIF2B4Q9UI10 523 aaKnown RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 NOCTQ9UK39 431 aaKnown RBP22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 DAAM1Q9Y4D1 1078 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 LAMA1P25391 3075 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 CACNA1EQ15878 2313 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 NUMA1Q14980 2115 aa22.37■■□□□ 1.17
CCDC28B-201ENST00000373602 BCAT2O15382 392 aaPredicted RBP22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 RNASEH1O60930 286 aaKnown RBP22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 GFPT2O94808 682 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 ADCY5O95622 1261 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 SEMA4FO95754 770 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 F9P00740 461 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 IRAK1P51617 712 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 COPB1P53618 953 aaKnown RBP22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 JAM2P57087 298 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 SHC2P98077 582 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 MYL5Q02045 173 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 ZNF252P-AS1Q0IIN9 211 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 GRIK2Q13002 908 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 SLC25A52Q3SY17 297 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 C2CD6Q53TS8 623 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 CPA5Q8WXQ8 436 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 ALG14Q96F25 216 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms