RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GALNT4Q8N4A0 578 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 RNF139Q8WU17 664 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 LENG8Q96PV6 779 aaPredicted RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 MED10Q9BTT4 135 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 GCOM2Q9BZD3 368 aaPredicted RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 NUF2Q9BZD4 464 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 CDHR5Q9HBB8 845 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 IARS2Q9NSE4 1012 aaKnown RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 RGS17Q9UGC6 210 aaPredicted RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 CYP2C8P10632 490 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 PGAM1P18669 254 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 MPSTP25325 297 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 GARSP41250 739 aaKnown RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 MAGEA3P43357 314 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 CMPK2Q5EBM0 449 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 SYPL2Q5VXT5 272 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 PPP2R3CQ969Q6 453 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 NMD3Q96D46 503 aaKnown RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 CMTM5Q96DZ9 223 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 KLHL4Q9C0H6 718 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 C20orf96Q9NUD7 363 aaPredicted RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 PDP2Q9P2J9 529 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 KIAA1257Q9ULG3 409 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 INPP5FQ9Y2H2 1132 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 MYOCOSA0A1B0GUC4 107 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 FKBP6O75344 327 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 OR6B1O95007 311 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 IL1BP01584 269 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 GSTA2P09210 222 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 COX4I1P13073 169 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 ATP6V1B1P15313 513 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 MRPS22P82650 360 aaKnown RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 FSTL4Q6MZW2 842 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 CCNYL1Q8N7R7 359 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 TDRD5Q8NAT2 981 aaKnown RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 SLC7A14Q8TBB6 771 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 PIP4K2CQ8TBX8 421 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 FERMT1Q9BQL6 677 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 TASP1Q9H6P5 420 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 CHRAC1Q9NRG0 131 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 CLIC5Q9NZA1 410 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 RBPJLQ9UBG7 517 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 SSX2IPQ9Y2D8 614 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 PTPRFP10586 1907 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 FAM72CH0Y354 149 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 TK2O00142 265 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 GP5P40197 560 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 ROR2Q01974 943 aaKnown RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 NIPAL4Q0D2K0 466 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 BST2Q10589 180 aaKnown RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 PDCD2Q16342 344 aaPredicted RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 FAM72AQ5TYM5 149 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 FAM72DQ6L9T8 149 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 HFE2Q6ZVN8 426 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 MARK2Q7KZI7 788 aaKnown RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 PTAR1Q7Z6K3 402 aaPredicted RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 PIGZQ86VD9 579 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 FAM72BQ86X60 149 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 SNX32Q86XE0 403 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 ST13P4Q8IZP2 240 aaPredicted RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 GALNT15Q8N3T1 639 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 FAM156AQ8NDB6 213 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 KCNN1Q92952 543 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 CELF6Q96J87 481 aaKnown RBP12.42□□□□□ -0.42
CLIP3-201ENST00000360535 CATSPER2Q96P56 530 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 SHROOM3Q8TF72 1996 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 SIP14410 1827 aa12.42□□□□□ -0.42
CLIP3-201ENST00000360535 H3BRB1 525 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 STX16-NPEPL1H3BU86 382 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 EEF2KO00418 725 aaKnown RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 DPYSL4O14531 572 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 BUD23O43709 281 aaKnown RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 BEST1O76090 585 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 FDFT1P37268 417 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 NR2C2P49116 596 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 ZNF460Q14592 562 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 CNPY1Q3B7I2 92 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 LRRC8BQ6P9F7 803 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 ARMCX2Q7L311 632 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 CDRT15Q96T59 188 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 OMDQ99983 421 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 TUT1Q9H6E5 874 aaKnown RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 LRRC4Q9HBW1 653 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 TRPA1O75762 1119 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 IGFBP6P24592 240 aaPredicted RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 CRABP2P29373 138 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 TKTP29401 623 aaKnown RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 SNX16P57768 344 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 DEUP1Q05D60 604 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 KLF10Q13118 480 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 TBCCQ15814 346 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 TMCO4Q5TGY1 634 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 FAM219BQ5XKK7 198 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 SNX31Q8N9S9 440 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 BEST2Q8NFU1 509 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 TMA16Q96EY4 203 aaKnown RBP12.41□□□□□ -0.42
CLIP3-201ENST00000360535 BFARQ9NZS9 450 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 MORF4L1Q9UBU8 362 aa12.41□□□□□ -0.42
CLIP3-201ENST00000360535 VANGL2Q9ULK5 521 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms