RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MBLAC2Q68D91 279 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 ENDOVQ8N8Q3 282 aaKnown RBP22.32■■□□□ 1.16
SHMT1-202ENST00000352886 EDEM1Q92611 657 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 FCRL3Q96P31 734 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-202ENST00000352886 COLEC11Q9BWP8 271 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 RHOBTB2Q9BYZ6 727 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.32■■□□□ 1.16
SHMT1-202ENST00000352886 DCDC2Q9UHG0 476 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 MYADML2A6NDP7 307 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 CAPN14A8MX76 684 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 PLIN3O60664 434 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 CTSHP09668 335 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 KCNA4P22459 653 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 CPA2P48052 419 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 DBN1Q16643 649 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 SMC1BQ8NDV3 1235 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 PGAP3Q96FM1 320 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-202ENST00000352886 RAD54BQ9Y620 910 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 CASTOR2A6NHX0 329 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 AP2A1O95782 977 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 C6orf222P0C671 652 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-202ENST00000352886 GP5P40197 560 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 CDK18Q07002 472 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 ARL13BQ3SXY8 428 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 PPM1JQ5JR12 505 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 TREML1Q86YW5 311 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 PAAF1Q9BRP4 392 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 CDH9Q9ULB4 789 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 VANGL2Q9ULK5 521 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 TRPV2Q9Y5S1 764 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 SNX10Q9Y5X0 201 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 HHLA1C9JL84 531 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 NCAM2O15394 837 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 ZBTB24O43167 697 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-202ENST00000352886 LYPLA1O75608 230 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-202ENST00000352886 ENO1P06733 434 aaKnown RBP22.31■■□□□ 1.16
SHMT1-202ENST00000352886 FGF3P11487 239 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-202ENST00000352886 TYK2P29597 1187 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 HCAR3P49019 387 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 TAF1CQ15572 869 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-202ENST00000352886 DNAAF3Q8N9W5 541 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 SH3TC2Q8TF17 1288 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 ZNF669Q96BR6 464 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-202ENST00000352886 RILPQ96NA2 401 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 WDCPQ9H6R7 721 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 LRRC40Q9H9A6 602 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 PTCH2Q9Y6C5 1203 aa22.31■■□□□ 1.16
SHMT1-202ENST00000352886 ARL5CA6NH57 179 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 ITM2AO43736 263 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 SCNN1GP51170 649 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 PCLAFQ15004 111 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 KHDC1Q4VXA5 237 aaKnown RBP22.3■■□□□ 1.16
SHMT1-202ENST00000352886 BHLHA9Q7RTU4 235 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 TEX9Q8N6V9 391 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 SMARCD1Q96GM5 515 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 CPNE1Q99829 537 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 EBF4Q9BQW3 602 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 BFARQ9NZS9 450 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 ZBTB17Q13105 803 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 TKTL2Q9H0I9 626 aa22.3■■□□□ 1.16
SHMT1-202ENST00000352886 CD68P34810 354 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 GMPRP36959 345 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 RGS2P41220 211 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 GARSP41250 739 aaKnown RBP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 CLNS1AP54105 237 aaKnown RBP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 ALDH18A1P54886 795 aaKnown RBP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 RCN2Q14257 317 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 SERBP1Q8NC51 408 aaKnown RBP eCLIP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 HDAC11Q96DB2 347 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 ATXN7L3BQ96GX2 97 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 DCLRE1BQ9H816 532 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 TMEM216Q9P0N5 145 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 OR12D3Q9UGF7 316 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 MAGED2Q9UNF1 606 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 E2F8A0AVK6 867 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 ZNF189O75820 626 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 F9P00740 461 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 PRKCGP05129 697 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 SLC1A6P48664 564 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 TIGD5Q53EQ6 642 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 TEDDM1Q5T9Z0 273 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 GRTP1Q5TC63 336 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 CMC1Q7Z7K0 106 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 WDR75Q8IWA0 830 aaKnown RBP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 PIWIL2Q8TC59 973 aaKnown RBP22.29■■□□□ 1.16
SHMT1-202ENST00000352886 EPAS1Q99814 870 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 GBA3Q9H227 469 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 RRN3Q9NYV6 651 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 DNAJC16Q9Y2G8 782 aa22.29■■□□□ 1.16
SHMT1-202ENST00000352886 B2RBV5 119 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 LMNAP02545 664 aaKnown RBP22.28■■□□□ 1.16
SHMT1-202ENST00000352886 PROCP04070 461 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 MX2P20592 715 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 KPNB1Q14974 876 aaKnown RBP22.28■■□□□ 1.16
SHMT1-202ENST00000352886 KCTD11Q693B1 232 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 AGMOQ6ZNB7 445 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 TMEM135Q86UB9 458 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 C10orf107Q8IVU9 208 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 MYLPFQ96A32 169 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 ZNF778Q96MU6 729 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms