RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 BCL7CQ8WUZ0 217 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 TFB1MQ8WVM0 346 aaKnown RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 CPT1BQ92523 772 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 ITFG2Q969R8 447 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 ZNF689Q96CS4 500 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 IGSF21Q96ID5 467 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 QKIQ96PU8 341 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLK3-201ENST00000345005 EPAS1Q99814 870 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 FERMT1Q9BQL6 677 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 OSBPL2Q9H1P3 480 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 SAR1AQ9NR31 198 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 ETNK2Q9NVF9 386 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 FETUBQ9UGM5 382 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 L3MBTL1Q9Y468 752 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 SHROOM3Q8TF72 1996 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 COL4A6Q14031 1691 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 A0A1W2PQH9 124 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 FAM92AA1XBS5 289 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 RASA4BC9J798 803 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 IRAK2O43187 625 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 RASA4O43374 803 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 GCATO75600 419 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 RAG1P15918 1043 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 CALB2P22676 271 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 YWHAQP27348 245 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 CCR1P32246 355 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 GPR15P49685 360 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 PDK1Q15118 436 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 SDHAF4Q5VUM1 108 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 HEATR6Q6AI08 1181 aaKnown RBP13.17□□□□□ -0.3
CLK3-201ENST00000345005 PRSS55Q6UWB4 352 aaPredicted RBP13.17□□□□□ -0.3
CLK3-201ENST00000345005 RSPO2Q6UXX9 243 aaPredicted RBP13.17□□□□□ -0.3
CLK3-201ENST00000345005 DENND5BQ6ZUT9 1274 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 NAT8LQ8N9F0 302 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 FBXO22Q8NEZ5 403 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 ZNF483Q8TF39 744 aaPredicted RBP13.17□□□□□ -0.3
CLK3-201ENST00000345005 PWWP2AQ96N64 755 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 OLFM3Q96PB7 478 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 HAPLN3Q96S86 360 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 RNPEPL1Q9HAU8 725 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 ANLNQ9NQW6 1124 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 DNAJC17Q9NVM6 304 aaKnown RBP13.17□□□□□ -0.3
CLK3-201ENST00000345005 ARHGEF38Q9NXL2 777 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 OR12D3Q9UGF7 316 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 STK38LQ9Y2H1 464 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 BACE2Q9Y5Z0 518 aa13.17□□□□□ -0.3
CLK3-201ENST00000345005 TRIM43BA6NCK2 446 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 FAM72CH0Y354 149 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 I6L893 689 aaPredicted RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 DCLK1O15075 740 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 MAP3K6O95382 1288 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 CSF2RAP15509 400 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ERCC2P18074 760 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 HTR7P34969 479 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ARL4CP56559 192 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 BASP1P80723 227 aaKnown RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 MRPS35P82673 323 aaKnown RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 PPP2R5DQ14738 602 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 PSMD5Q16401 504 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 HIF1AQ16665 826 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 TSNAXIP1Q2TAA8 658 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 MGAT5BQ3V5L5 792 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ANKRD20A2Q5SQ80 823 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 FAM72AQ5TYM5 149 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ANKRD20A1Q5TYW2 823 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ANKRD20A3Q5VUR7 823 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SLC8B1Q6J4K2 584 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 FAM72DQ6L9T8 149 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 KIAA1841Q6NSI8 718 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 MSANTD2Q6P1R3 559 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 FAM72BQ86X60 149 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 RNF168Q8IYW5 571 aaPredicted RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 TRIM43Q96BQ3 446 aaPredicted RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 NAF1Q96HR8 494 aaKnown RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 CEP295NLQ96MC4 621 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ZNF558Q96NG5 402 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SERPINB11Q96P15 392 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SMC6Q96SB8 1091 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 KLC2Q9H0B6 622 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 NMUR1Q9HB89 426 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SAYSD1Q9NPB0 183 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 PRDM5Q9NQX1 630 aaPredicted RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 ETAA1Q9NY74 926 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 MTRRQ9UBK8 725 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SLC24A2Q9UI40 661 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SLC27A5Q9Y2P5 690 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 CDY1Q9Y6F8 540 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ALOX15BO15296 676 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 CHADO15335 359 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 NCAM2O15394 837 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 MFSD11O43934 449 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SMNDC1O75940 238 aaKnown RBP eCLIP13.16□□□□□ -0.36e-7■■□□□ 13.7
CLK3-201ENST00000345005 VNN2O95498 520 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ASMTLO95671 621 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SLC2A3P11169 496 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 RGS19P49795 217 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 DUSP4Q13115 394 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 TAF11Q15544 211 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 PDCD2Q16342 344 aaPredicted RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 PDK4Q16654 411 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms