RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ARL2BPQ9Y2Y0 163 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 TMEM189-UBE2V1I3L0A0 370 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 DNAJC6O75061 913 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 PPFIA2O75334 1257 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 HAUS5O94927 633 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 NFATC1O95644 943 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 PROZP22891 400 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 ELK3P41970 407 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 SLC5A3P53794 718 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 CSE1LP55060 971 aaKnown RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 AP1S1P61966 158 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 RING1Q06587 406 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 PDAP1Q13442 181 aaKnown RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 DPYSL3Q14195 570 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 DUPD1Q68J44 220 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 TDRD5Q8NAT2 981 aaKnown RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 BTAF1O14981 1849 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 LIASO43766 372 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 CNMDO75829 334 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 BCL2L1Q07817 233 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 TRIP4Q15650 581 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 RAB30Q15771 203 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 CRELD2Q6UXH1 353 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 GET4Q7L5D6 327 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 TMC3Q7Z5M5 1100 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 IQCKQ8N0W5 287 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 C1QTNF7Q9BXJ2 289 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 OSBPL2Q9H1P3 480 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 PHF24Q9UPV7 400 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 PCDHA11Q9Y5I1 949 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 STRCP1A6NGW2 1772 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 RGPD5Q99666 1765 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 STK25O00506 426 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 ACSL4O60488 711 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 SYNCRIPO60506 623 aaKnown RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 BAIAP3O94812 1187 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 LRIG2O94898 1065 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 CKBP12277 381 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 ADRA1DP25100 572 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 RPL22P35268 128 aaKnown RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 LPIN1Q14693 890 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 FAM46CQ5VWP2 391 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 LCA5Q86VQ0 697 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 SLC35F5Q8WV83 523 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 SLCO2A1Q92959 643 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 MRPL45Q9BRJ2 306 aaKnown RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 ARHGEF4Q9NR80 690 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 PCDHGB4Q9UN71 923 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 NRP1O14786 923 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 LZTS3O60299 673 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 ADAMTS4O75173 837 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 VNN1O95497 513 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 FAM107AO95990 144 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 C8AP07357 584 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 KRT33BQ14525 404 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 FAXCQ5TGI0 409 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 ERAP2Q6P179 960 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 DDX53Q86TM3 631 aaKnown RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 XYLT1Q86Y38 959 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 SLC35B2Q8TB61 432 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 ADAM32Q8TC27 787 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 PTCD2Q8WV60 388 aaKnown RBP7.02□□□□□ -1.29
SF3B1-201ENST00000335508 PNKPQ96T60 521 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 TAS2R13Q9NYV9 303 aa7.02□□□□□ -1.29
SF3B1-201ENST00000335508 ABCE1P61221 599 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 DPYSL2Q16555 572 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 MPPE1Q53F39 396 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PCID2Q5JVF3 399 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ANKRD20A2Q5SQ80 823 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ANKRD20A1Q5TYW2 823 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PLD5Q8N7P1 536 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TIFAQ96CG3 184 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PAFAH2Q99487 392 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ELAC2Q9BQ52 826 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 RIC8BQ9NVN3 520 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TRMT6Q9UJA5 497 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 FBXO5Q9UKT4 447 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SLC39A10Q9ULF5 831 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ADGRA2Q96PE1 1338 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 OAZ2O95190 189 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 GLP2RO95838 553 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 CATP04040 527 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 CHRM3P20309 590 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PIK3CGP48736 1102 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ANKMY2Q8IV38 441 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PGBD3Q8N328 593 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 HAPLN3Q96S86 360 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TCF12Q99081 682 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 RAD9AQ99638 391 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 AFDNP55196 1824 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TMEM247A6NEH6 219 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 NT5C1B-RDH14C9J2C7 533 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TBC1D4O60343 1298 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ASMTLO95671 621 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SOD2P04179 222 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PTPN2P17706 415 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 MAP4P27816 1152 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 MKRN4PQ13434 485 aaPredicted RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SLC12A1Q13621 1099 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms