RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PPP6CO00743 305 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 STX16O14662 325 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 CCNT1O60563 726 aaKnown RBP3.72□□□□□ -1.81
HMGB1-201ENST00000326004 PPFIA2O75334 1257 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 CD63P08962 238 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 CSF1P09603 554 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 ACP5P13686 325 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 ADPRHP54922 357 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 VAMP2P63027 116 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 B4GALNT1Q00973 533 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 POU5F1BQ06416 359 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 MTA1Q13330 715 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 ALKBH1Q13686 389 aaKnown RBP3.72□□□□□ -1.81
HMGB1-201ENST00000326004 SEC23BQ15437 767 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 MIS18BP1Q6P0N0 1132 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 KIAA1324Q6UXG2 1013 aaKnown RBP3.72□□□□□ -1.81
HMGB1-201ENST00000326004 ZNF66Q6ZN08 573 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 CPOQ8IVL8 374 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 DNAJC10Q8IXB1 793 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 PAQR4Q8N4S7 273 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-201ENST00000326004 DPF1Q92782 380 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 PPP1R10Q96QC0 940 aaKnown RBP3.72□□□□□ -1.81
HMGB1-201ENST00000326004 CRAMP1Q96RY5 1269 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 OSBPL5Q9H0X9 879 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-201ENST00000326004 PTGFRNQ9P2B2 879 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 IPO11Q9UI26 975 aaKnown RBP3.72□□□□□ -1.81
HMGB1-201ENST00000326004 SLC25A13Q9UJS0 675 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 SLC13A4Q9UKG4 626 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 SUFUQ9UMX1 484 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 VWA3AA6NCI4 1184 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 NPIPB13A6NJU9 1138 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 NPIPB5A8MRT5 1133 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 NPIPB4C9JG80 1138 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 METTL18O95568 372 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 HOXB9P17482 250 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-201ENST00000326004 PRPH2P23942 346 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 HOXA7P31268 230 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-201ENST00000326004 RPS6KA3P51812 740 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 YPEL5P62699 121 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 GHRHRQ02643 423 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 CHRNDQ07001 517 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 GOLGA8FQ08AF8 430 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 TRPC3Q13507 836 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 GXYLT1Q4G148 440 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 LRRC24Q50LG9 513 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 RUNDC3AQ59EK9 446 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 CBWD5Q5RIA9 395 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 LIPMQ5VYY2 423 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 DENND1BQ6P3S1 775 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 SYCE2Q6PIF2 218 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 RTL10Q7L3V2 364 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-201ENST00000326004 GALNT7Q86SF2 657 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 EXD3Q8N9H8 876 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 IL17REQ8NFR9 667 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 KCNJ9Q92806 393 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 RBM17Q96I25 401 aaKnown RBP3.71□□□□□ -1.82
HMGB1-201ENST00000326004 ZNF347Q96SE7 839 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 REEP2Q9BRK0 252 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 ARHGAP39Q9C0H5 1083 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 CLPBQ9H078 707 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 RMI1Q9H9A7 625 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 TXNRD2Q9NNW7 524 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 THAP1Q9NVV9 213 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 C9orf78Q9NZ63 289 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-201ENST00000326004 TNFSF13BQ9Y275 285 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 DTX4Q9Y2E6 619 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 GDAQ9Y2T3 454 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 PKP3Q9Y446 797 aa3.71□□□□□ -1.82
HMGB1-201ENST00000326004 ZNF335Q9H4Z2 1342 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-201ENST00000326004 CCDC196A0A1B0GTZ2 297 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 KCNJ18B7U540 433 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 HOXC11O43248 304 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-201ENST00000326004 ANP32CO43423 234 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 HLA-DQA2P01906 255 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 CYP4B1P13584 511 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 PKMP14618 531 aaKnown RBP3.7□□□□□ -1.82
HMGB1-201ENST00000326004 ST6GAL1P15907 406 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 XBP1P17861 261 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 CNTFP26441 200 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 GSTM2P28161 218 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 EPHB2P29323 1055 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 STAT1P42224 750 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 NANOS3P60323 173 aaKnown RBP3.7□□□□□ -1.82
HMGB1-201ENST00000326004 RPS13P62277 151 aaKnown RBP3.7□□□□□ -1.82
HMGB1-201ENST00000326004 CFHR1Q03591 330 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.7□□□□□ -1.82
HMGB1-201ENST00000326004 SLC9C1Q4G0N8 1177 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 EARS2Q5JPH6 523 aaKnown RBP3.7□□□□□ -1.82
HMGB1-201ENST00000326004 CEP78Q5JTW2 689 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 C10orf76Q5T2E6 689 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 MMS22LQ6ZRQ5 1243 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 MDGA2Q7Z553 956 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 TMEM200AQ86VY9 491 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 SCN4BQ8IWT1 228 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 LINS1Q8NG48 757 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 SH3KBP1Q96B97 665 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 MASTLQ96GX5 879 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 MAELQ96JY0 434 aaKnown RBP3.7□□□□□ -1.82
HMGB1-201ENST00000326004 ADAD1Q96M93 576 aaKnown RBP3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms