RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ME2P23368 584 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 WARSP23381 471 aaKnown RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 LPIN1Q14693 890 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 CCL15Q16663 113 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 TMC2Q8TDI7 906 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 STK32AQ8WU08 396 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 TPRKBQ9Y3C4 175 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 SPTBN1Q01082 2364 aaKnown RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 C17orf102A2RUQ5 167 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 CCDC154A6NI56 674 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 LIN7AO14910 233 aaPredicted RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 SHBGP04278 402 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 RLN1P04808 185 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 NR3C2P08235 984 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 EXOSC10Q01780 885 aaKnown RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 ZNF571Q7Z3V5 609 aaPredicted RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 ATXN2LQ8WWM7 1075 aaKnown RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 SH3GLB1Q9Y371 365 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 PCDHB2Q9Y5E7 798 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 TCEA3O75764 348 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 MGAT1P26572 445 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 MAPK1P28482 360 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 RPA3P35244 121 aaPredicted RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 PDIA5Q14554 519 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 EXOC3L1Q86VI1 746 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 HMG20AQ9NP66 347 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 INTS10Q9NVR2 710 aaKnown RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 CCDC162PA2VCL2 907 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 MAGEB2O15479 319 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 ELK3P41970 407 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 NEK3P51956 506 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 OCLNQ16625 522 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 PCNX4Q63HM2 1172 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 LSM14AQ8ND56 463 aaKnown RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 SPTBN2O15020 2390 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 LPCAT1Q8NF37 534 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 ZNF75CPQ92670 426 aaPredicted RBP8.05□□□□□ -1.12
CIITA-201ENST00000324288 PLGRKTQ9HBL7 147 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 KCNH7Q9NS40 1196 aa8.05□□□□□ -1.12
CIITA-201ENST00000324288 SLC37A4O43826 429 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 GJB6O95452 261 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 GRSF1Q12849 480 aaKnown RBP eCLIP8.04□□□□□ -1.12
CIITA-201ENST00000324288 ALX1Q15699 326 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 KCNV1Q6PIU1 500 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 EMC1Q8N766 993 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 GALNT8Q9NY28 637 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 KIF20BQ96Q89 1820 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 FAM220BPB1ANY3 271 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 CYP11B1P15538 503 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 SEPHS1P49903 392 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 FOXO4P98177 505 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 ORC2Q13416 577 aaPredicted RBP8.04□□□□□ -1.12
CIITA-201ENST00000324288 CASP12Q6UXS9 341 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 RXFP2Q8WXD0 754 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 PIGKQ92643 395 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 STN1Q9H668 368 aaKnown RBP8.04□□□□□ -1.12
CIITA-201ENST00000324288 REEP1Q9H902 201 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 GPAMQ9HCL2 828 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 TAF6LQ9Y6J9 622 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 NRP2O60462 931 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 STILQ15468 1287 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 AADACL2Q6P093 401 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 SPOCD1Q6ZMY3 1216 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 ZNF276Q8N554 614 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 LEMD2Q8NC56 503 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 NSUN4Q96CB9 384 aaKnown RBP8.04□□□□□ -1.12
CIITA-201ENST00000324288 CCDC115Q96NT0 180 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 KLF15Q9UIH9 416 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 ANAPC2Q9UJX6 822 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 ING4Q9UNL4 249 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 CROCC2H7BZ55 1655 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 PRLP01236 227 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 VCLP18206 1134 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 AKAP5P24588 427 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 PON1P27169 355 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 SSTR1P30872 391 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 MRNIPQ6NTE8 343 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 POLNQ7Z5Q5 900 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 ZNF605Q86T29 641 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 SLC41A1Q8IVJ1 513 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 OR7A2PQ8NGA2 310 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 PHF12Q96QT6 1004 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 DYRK3O43781 588 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 RASSF6Q6ZTQ3 369 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 TRMT11Q7Z4G4 463 aaKnown RBP8.04□□□□□ -1.12
CIITA-201ENST00000324288 MRPL48Q96GC5 212 aaKnown RBP8.04□□□□□ -1.12
CIITA-201ENST00000324288 B3GALT6Q96L58 329 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 TRPV5Q9NQA5 729 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 USP18Q9UMW8 372 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 L1RE1Q9UN81 338 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 CTDNEP1O95476 244 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 IDH2P48735 452 aaKnown RBP8.04□□□□□ -1.12
CIITA-201ENST00000324288 ERVK-9P63128 1117 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 C16orf59Q7L2K0 433 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 AMIGO2Q86SJ2 522 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 CLYBLQ8N0X4 340 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 ATG4CQ96DT6 458 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 PGLYRP2Q96PD5 576 aa8.04□□□□□ -1.12
CIITA-201ENST00000324288 MLPHQ9BV36 600 aaPredicted RBP8.04□□□□□ -1.12
CIITA-201ENST00000324288 SEMA6BQ9H3T3 888 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms