RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 FBXL19Q6PCT2 694 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 ANKRD23Q86SG2 305 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 CAND1Q86VP6 1230 aaKnown RBP15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 GAD1Q99259 594 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 IQCGQ9H095 443 aaKnown RBP15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 PLEKHA5Q9HAU0 1116 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 ZNF510Q9Y2H8 683 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 TEX264Q9Y6I9 313 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 A0A088AWK7 358 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 CASTOR2A6NHX0 329 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 PRR5-ARHGAP8B1AHC4 643 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 M0QYT0 321 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 KCNK1O00180 336 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 PFDN1O60925 122 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 ENDOD1O94919 500 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 PGK1P00558 417 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 VCLP18206 1134 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 PEX2P28328 305 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 ARHGAP8P85298 464 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 MED21Q13503 144 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 TMCO4Q5TGY1 634 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 CXCL17Q6UXB2 119 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 B3GALNT2Q8NCR0 500 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 DEPDC1BQ8WUY9 529 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 AP5M1Q9H0R1 490 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 LRRC4Q9HBW1 653 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 DDX18Q9NVP1 670 aaKnown RBP15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 CNTN3Q9P232 1028 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 PLXNB2O15031 1838 aa15.96■□□□□ 0.15
SHROOM1-201ENST00000319854 CCDC78A2IDD5 438 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 USP12O75317 370 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 ATP6V1G1O75348 118 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 MAGEA10P43363 369 aaPredicted RBP15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 ALDH18A1P54886 795 aaKnown RBP15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 SLC25A3Q00325 362 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 UBAP2LQ14157 1087 aaKnown RBP15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 GRM2Q14416 872 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 EDEM1Q92611 657 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 PAAF1Q9BRP4 392 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 S100A14Q9HCY8 104 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 UQCRBP14927 111 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 GMPRP36959 345 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 STILQ15468 1287 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 SH2D5Q6ZV89 423 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 ARID3BQ8IVW6 561 aaPredicted RBP15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 LRRC52Q8N7C0 313 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 SMC1BQ8NDV3 1235 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 GTF3C2Q8WUA4 911 aaPredicted RBP15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 ATXN7L3BQ96GX2 97 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 SMYD2Q9NRG4 433 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 DTLQ9NZJ0 730 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 SNX10Q9Y5X0 201 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 ARL4AP40617 200 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 NUMBP49757 651 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 NT5DC4Q86YG4 428 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 SIX6OS1Q8N1H7 587 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 SLC7A14Q8TBB6 771 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 C20orf27Q9GZN8 174 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 MTMR10Q9NXD2 777 aa15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 GNEQ9Y223 722 aaKnown RBP15.95■□□□□ 0.14
SHROOM1-201ENST00000319854 E7ESA3 106 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 PIRO00625 290 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 MFSD11O43934 449 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 ASPHQ12797 758 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 RALGPS1Q5JS13 557 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 GNASQ5JWF2 1037 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 UBXN11Q5T124 520 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 ACBD5Q5T8D3 534 aaPredicted RBP15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 FAM91A1Q658Y4 838 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 ZNF467Q7Z7K2 595 aaPredicted RBP15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 DHDDSQ86SQ9 333 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 CHSY1Q86X52 802 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 EFCAB3Q8N7B9 438 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 SMG8Q8ND04 991 aaKnown RBP15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 HIPK4Q8NE63 616 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 FRMD8P1Q9BZ68 369 aaPredicted RBP15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 ZDHHC7Q9NXF8 308 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 TAGLN3Q9UI15 199 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 SMIM35A0A1B0GVV1 85 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 SPECC1L-ADORA2AF8WAN1 911 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 SMIM18P0DKX4 95 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 CPOXP36551 454 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 MAP2K5Q13163 448 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 RBM44Q6ZP01 1051 aaKnown RBP15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 TTC39CQ8N584 583 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 EBF4Q9BQW3 602 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 CCDC106Q9BWC9 280 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 PCDHGA4Q9Y5G9 962 aa15.94■□□□□ 0.14
SHROOM1-201ENST00000319854 A0A0J9YVX5 310 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 IQANK1A0A1B0GTG1 560 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 WDR27A2RRH5 827 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 C17orf102A2RUQ5 167 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 TXNDC9O14530 226 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 CD4P01730 458 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 CSH1P0DML2 217 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 CSH2P0DML3 217 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 MAGEA8P43361 318 aa15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 ZNF157P51786 506 aaPredicted RBP15.93■□□□□ 0.14
SHROOM1-201ENST00000319854 TKTL1P51854 596 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms