RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 GOLGA8MH3BSY2 632 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 INO80B-WBP1J3KQ70 363 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 HNRNPDLO14979 420 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 TSPAN1O60635 241 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 STAG3L1P0CL83 205 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 SMIM18P0DKX4 95 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 NAMPTP43490 491 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 RPL5P46777 297 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 TMPRSS15P98073 1019 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 CCNIQ14094 377 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 C2CD6Q53TS8 623 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 DCUN1D2Q6PH85 259 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 SPATA24Q86W54 205 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 PASD1Q8IV76 773 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 NUDCD3Q8IVD9 361 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 IGDCC3Q8IVU1 814 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 KLHL23Q8NBE8 558 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 GFM2Q969S9 779 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 PRICKLE1Q96MT3 831 aaPredicted RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 MCEEQ96PE7 176 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 TTC1Q99614 292 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 LHX5Q9H2C1 402 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 PRDM12Q9H4Q4 367 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 CERS4Q9HA82 394 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 RNF19AQ9NV58 838 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 TMEM161AQ9NX61 479 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 C6orf203Q9P0P8 240 aaPredicted RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 LRFN2Q9ULH4 789 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 PCDHB7Q9Y5E2 793 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 MCF2LO15068 1137 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 B4GALT5O43286 388 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 CST8O60676 142 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 KRT38O76015 456 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 CAPNS1P04632 268 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 HARSP12081 509 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 POLR2BP30876 1174 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 GRIA2P42262 883 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 AQP5P55064 265 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 PDK3Q15120 406 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 NOMO1Q15155 1222 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 ADRM1Q16186 407 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 SFT2D3Q587I9 215 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 TXNRD3NBQ6F5E7 133 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 CDHR3Q6ZTQ4 885 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 ZNF598Q86UK7 904 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 ARID3BQ8IVW6 561 aaPredicted RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 UNC45BQ8IWX7 931 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 CATSPER1Q8NEC5 780 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 MYLIPQ8WY64 445 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 ACAP3Q96P50 834 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 DDX50Q9BQ39 737 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 KIFC3Q9BVG8 833 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 ELAC1Q9H777 363 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 RSAD1Q9HA92 442 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 ALG13Q9NP73 1137 aaKnown RBP10.6□□□□□ -0.71
UPF3B-201ENST00000276201 TIMMDC1Q9NPL8 285 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 PAK5Q9P286 719 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 RAB26Q9ULW5 256 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 CHMP2BQ9UQN3 213 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 SF3B1O75533 1304 aaKnown RBP eCLIP10.6□□□□□ -0.715e-6■■■■■ 61.2
UPF3B-201ENST00000276201 MYO9BQ13459 2157 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 A0A0U1RQF3 1178 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 PRR5-ARHGAP8B1AHC4 643 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 SLC34A2O95436 690 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 BAG2O95816 211 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 ITGA2BP08514 1039 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 LINC00271P0C7V0 271 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 CPA2P48052 419 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 EIF3EP60228 445 aaKnown RBP10.59□□□□□ -0.71
UPF3B-201ENST00000276201 ERVK-21P61565 698 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 ARHGAP8P85298 464 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 PDE1BQ01064 536 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 STX3Q13277 289 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 MYBPC3Q14896 1274 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 PCBP1Q15365 356 aaKnown RBP eCLIP10.59□□□□□ -0.71
UPF3B-201ENST00000276201 CHI3L2Q15782 390 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 HSP90AA5PQ58FG0 334 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 UBXN11Q5T124 520 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 TWF2Q6IBS0 349 aaKnown RBP10.59□□□□□ -0.71
UPF3B-201ENST00000276201 B3GNT6Q6ZMB0 384 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 RNF111Q6ZNA4 994 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 WDR75Q8IWA0 830 aaKnown RBP10.59□□□□□ -0.71
UPF3B-201ENST00000276201 AHI1Q8N157 1196 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 SLC4A11Q8NBS3 891 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 DEPTORQ8TB45 409 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 C17orf80Q9BSJ5 609 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 MRPS26Q9BYN8 205 aaKnown RBP10.59□□□□□ -0.71
UPF3B-201ENST00000276201 Q9H521 79 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 ZNF696Q9H7X3 374 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 POPDC2Q9HBU9 364 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 LMCD1Q9NZU5 365 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 AGO2Q9UKV8 859 aaKnown RBP10.59□□□□□ -0.71
UPF3B-201ENST00000276201 NUB1Q9Y5A7 615 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 MAD1L1Q9Y6D9 718 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 CDH23Q9H251 3354 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 CNTNAP2Q9UHC6 1331 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 C2orf71A6NGG8 1288 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 FAM159BA6NKW6 160 aa10.59□□□□□ -0.71
UPF3B-201ENST00000276201 ASS1P00966 412 aaKnown RBP10.59□□□□□ -0.71
UPF3B-201ENST00000276201 CCDC130P13994 396 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms