RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 UGT1A8Q9HAW9 530 aa13.27□□□□□ -0.29
SPTLC1-201ENST00000262554 STARD7Q9NQZ5 370 aa13.27□□□□□ -0.29
SPTLC1-201ENST00000262554 PIH1D1Q9NWS0 290 aaKnown RBP13.27□□□□□ -0.29
SPTLC1-201ENST00000262554 ARHGEF38Q9NXL2 777 aa13.27□□□□□ -0.29
SPTLC1-201ENST00000262554 USH1CQ9Y6N9 552 aa13.27□□□□□ -0.29
SPTLC1-201ENST00000262554 NUP205Q92621 2012 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 TNFRSF10BO14763 440 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 ZBTB24O43167 697 aaPredicted RBP13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 B4GALT3O60512 393 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 RFPL1O75677 317 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 AP2A1O95782 977 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 POLBP06746 335 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 OR4Q2P0C623 313 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 SRGAP2BP0DMP2 458 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 CCR1P32246 355 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 HTR7P34969 479 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 CCNFP41002 786 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 ETV4P43268 484 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 EIF4EBP2Q13542 120 aaPredicted RBP13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 BMPR2Q13873 1038 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 CRYMQ14894 314 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 GALNTL6Q49A17 601 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 OTOAQ7RTW8 1153 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 ZNF276Q8N554 614 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 SLC43A3Q8NBI5 491 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 LINC01599Q8WXQ3 324 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 ARNTL2Q8WYA1 636 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 RMDN2Q96LZ7 410 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 TMEM106CQ9BVX2 250 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 SIK2Q9H0K1 926 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 ZCWPW1Q9H0M4 648 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 SMOC2Q9H3U7 446 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 TBC1D13Q9NVG8 400 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 SYBUQ9NX95 663 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 MKS1Q9NXB0 559 aa13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 ABI2Q9NYB9 513 aaPredicted RBP13.26□□□□□ -0.29
SPTLC1-201ENST00000262554 TROVE2P10155 538 aaKnown RBP eCLIP13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 ZNF33AQ06730 810 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 NIPAL4Q0D2K0 466 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 BNIP1Q12981 228 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 SETDB1Q15047 1291 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 NFE2Q16621 373 aaPredicted RBP13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 DEFB115Q30KQ5 88 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 TEX44Q53QW1 395 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 MROH9Q5TGP6 573 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 FITM2Q8N6M3 262 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 THOC1Q96FV9 657 aaKnown RBP13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 AGAP3Q96P47 875 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 CFHR5Q9BXR6 569 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 SLC40A1Q9NP59 571 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 TMEM51Q9NW97 253 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 FGF10O15520 208 aaPredicted RBP13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 TADA2AO75478 443 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 TRPA1O75762 1119 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 DCTN3O75935 186 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 GNRH1P01148 92 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 COL6A1P12109 1028 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 SERPINB4P48594 390 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 MGAT5Q09328 741 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 PRPSAP1Q14558 356 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 SPANXN3Q5MJ09 141 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 ZNF449Q6P9G9 518 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 TIFABQ6ZNK6 161 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 OR52K1Q8NGK4 314 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 FUBP3Q96I24 572 aaKnown RBP eCLIP13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 TSSK1BQ9BXA7 367 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 CATSPERBQ9H7T0 1116 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 LRRC40Q9H9A6 602 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 HMX1Q9NP08 348 aaPredicted RBP13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 TMEM161AQ9NX61 479 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 BFARQ9NZS9 450 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 SFMBT1Q9UHJ3 866 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 PRG3Q9Y2Y8 225 aaPredicted RBP13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 PLLPQ9Y342 182 aa13.25□□□□□ -0.29
SPTLC1-201ENST00000262554 PLXNA3P51805 1871 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 CENPFP49454 3210 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 A0A1W2PQH9 124 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 CFAP73A6NFT4 308 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 ARHGAP42A6NI28 874 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 ARVCFO00192 962 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 KIF3CO14782 793 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 SYN3O14994 580 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 PAGE1O75459 146 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 INHAP05111 366 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 ZBTB17Q13105 803 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 PPP2R5DQ14738 602 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 LHX8Q68G74 356 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 KCTD11Q693B1 232 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 LRRC8DQ7L1W4 858 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 SCD5Q86SK9 330 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 RASSF3Q86WH2 238 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 TRIM42Q8IWZ5 723 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 ABI1Q8IZP0 508 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 NDUFAF2Q8N183 169 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 LZTR1Q8N653 840 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 DNAAF3Q8N9W5 541 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 ZNF398Q8TD17 642 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 CASP10Q92851 521 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 TBC1D31Q96DN5 1066 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 CELF6Q96J87 481 aaKnown RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms