RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 BTBD3Q9Y2F9 522 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PRG4Q92954 1404 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ACOT7O00154 380 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 STX11O75558 287 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 NDUFB10O96000 172 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CSH1P0DML2 217 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CSH2P0DML3 217 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 KITP10721 976 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ACADSBP45954 432 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MLLT1Q03111 559 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 NAB1Q13506 487 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 FGL2Q14314 439 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 GRM2Q14416 872 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MELKQ14680 651 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 RRP1BQ14684 758 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ZCWPW2Q504Y3 356 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 DDI2Q5TDH0 399 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 NAA35Q5VZE5 725 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC81Q6ZN84 652 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ATP6V0D2Q8N8Y2 350 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 C3orf20Q8ND61 904 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 OR6B3Q8NGW1 331 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SUSD6Q92537 303 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ERLEC1Q96DZ1 483 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 NIFKQ9BYG3 293 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 BCL2L14Q9BZR8 327 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM2Q9C040 744 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CPVLQ9H3G5 476 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TOR3AQ9H497 397 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 FBXO28Q9NVF7 368 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 IMPAD1Q9NX62 359 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM9Q9P0T7 183 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 HEY2Q9UBP5 337 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 GGA2Q9UJY4 613 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF510Q9Y2H8 683 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TNKSO95271 1327 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM43BA6NCK2 446 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ZBTB22O15209 634 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 NOS1APO75052 506 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 CLEC3AO75596 197 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 UPP2O95045 317 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 THP07101 528 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 TARSP26639 723 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 CORO7P57737 925 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 OTUD4Q01804 1114 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ORC2Q13416 577 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 TAF13Q15543 124 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PDZK1Q5T2W1 519 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 HGSNATQ68CP4 663 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC6Q86X45 466 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 GSPT2Q8IYD1 628 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ELMOD2Q8IZ81 293 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 NUP93Q8N1F7 819 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF786Q8N393 782 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SAMD3Q8N6K7 520 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 DNAAF1Q8NEP3 725 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 DPF1Q92782 380 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 MARK4Q96L34 752 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM74Q96NL1 305 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 AMDHD1Q96NU7 426 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 GGNBP2Q9H3C7 697 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 FBXO44Q9H4M3 255 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 TRIM36Q9NQ86 728 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 AGPAT4Q9NRZ5 378 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 RIC8BQ9NVN3 520 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 MOCS1Q9NZB8 636 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHAC2Q9Y5I4 1007 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 GPC6Q9Y625 555 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 LRRK1Q38SD2 2015 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 A0A0A0MRY4 1105 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L15C9J2P7 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L13C9JLJ4 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L11C9JVI0 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L18D6R9N7 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L22D6RA61 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L17D6RBQ6 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L19D6RCP7 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L20D6RJB6 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PCDH8O95206 1070 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ENO1P06733 434 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PFKMP08237 780 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ITGA3P26006 1051 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 CSTF2P33240 577 aaKnown RBP eCLIP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PIK3CBP42338 1070 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 KCNJ5P48544 419 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 CASP4P49662 377 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SERPINH1P50454 418 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 RENBPP51606 427 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 COPS2P61201 443 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ZBED6P86452 979 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PTPN12Q05209 780 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 USP17L24Q0WX57 530 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 BLMHQ13867 455 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ZYXQ15942 572 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 C4orf22Q6V702 233 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 AKAP14Q86UN6 197 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 CD302Q8IX05 232 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 MYOCDQ8IZQ8 938 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 UXS1Q8NBZ7 420 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 FRS2Q8WU20 508 aa2.84□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms