RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	TFB1M	Q8WVM0	346 aa	Known RBP	10.78	□□□□□ -0.68
NECAP1-223	ENST00000640091	ART4	Q93070	314 aa		10.78	□□□□□ -0.68
NECAP1-223	ENST00000640091	IGSF8	Q969P0	613 aa		10.78	□□□□□ -0.68
NECAP1-223	ENST00000640091	OLFM3	Q96PB7	478 aa		10.78	□□□□□ -0.68
NECAP1-223	ENST00000640091	CEP41	Q9BYV8	373 aa		10.78	□□□□□ -0.68
NECAP1-223	ENST00000640091	ADAM7	Q9H2U9	754 aa		10.78	□□□□□ -0.68
NECAP1-223	ENST00000640091	SLC28A3	Q9HAS3	691 aa		10.78	□□□□□ -0.68
NECAP1-223	ENST00000640091	PDE4DIP	Q5VU43	2346 aa		10.77	□□□□□ -0.68
NECAP1-223	ENST00000640091	BCLAF3	A2AJT9	711 aa	Known RBP	10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	EPOP	A6NHQ4	379 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	TRDMT1	O14717	391 aa	Known RBP	10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	STC2	O76061	302 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	CCR2	P41597	374 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	HARS2	P49590	506 aa	Known RBP	10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	NUMB	P49757	651 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	KPNA1	P52294	538 aa	Predicted RBP	10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	COG7	P83436	770 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	ALF	Q53S48	1182 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	SLC45A4	Q5BKX6	768 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	IZUMO3	Q5VZ72	239 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	NUGGC	Q68CJ6	796 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	EMB	Q6PCB8	327 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	RFWD3	Q6PCD5	774 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	TFAP2D	Q7Z6R9	452 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	CFAP52	Q8N1V2	620 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	CCDC110	Q8TBZ0	833 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	GDPD5	Q8WTR4	605 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	TBC1D31	Q96DN5	1066 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	FMO2	Q99518	471 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	MSRA	Q9UJ68	235 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	ANAPC5	Q9UJX4	755 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	HBS1L	Q9Y450	684 aa	Known RBP	10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	HCFC2	Q9Y5Z7	792 aa		10.77	□□□□□ -0.69
NECAP1-223	ENST00000640091	VAV1	P15498	845 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	SLC6A4	P31645	630 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	ZNF135	P52742	658 aa	Predicted RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	XRCC4	Q13426	336 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	HEATR6	Q6AI08	1181 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	LRRC31	Q6UY01	552 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	BZW1	Q7L1Q6	419 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CIR1	Q86X95	450 aa	Predicted RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	ZNF683	Q8IZ20	524 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	EIF1AD	Q8N9N8	165 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	TSEN2	Q8NCE0	465 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	HTR3C	Q8WXA8	447 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	TCEAL4	Q96EI5	215 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	P2RY11	Q96G91	374 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	SAMD11	Q96NU1	681 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	RPRD1A	Q96P16	312 aa	Predicted RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	PRMT1	Q99873	361 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	KLF16	Q9BXK1	252 aa	Predicted RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	KLC2	Q9H0B6	622 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CATSPERB	Q9H7T0	1116 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	PCDH9	Q9HC56	1237 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	ASAH2	Q9NR71	780 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	DNAJC17	Q9NVM6	304 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	SEPT10	Q9P0V9	454 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	WHRN	Q9P202	907 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	DNMT3B	Q9UBC3	853 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	TPX2	Q9ULW0	747 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	C5orf42	Q9H799	3197 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	TRANK1	O15050	2925 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	SPDYE4	A6NLX3	237 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091		F5H423	210 aa	Predicted RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	GOLGA8M	H3BSY2	632 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	KCNK1	O00180	336 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	DFFA	O00273	331 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CORO1A	P31146	461 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	HOXC13	P31276	330 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CHKA	P35790	457 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	NTHL1	P78549	312 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	SMAD3	P84022	425 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	DHX9	Q08211	1270 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	PDK1	Q15118	436 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	FAXC	Q5TGI0	409 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	ARHGAP36	Q6ZRI8	547 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	PDZD4	Q76G19	769 aa	Predicted RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	HDX	Q7Z353	690 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CCDC25	Q86WR0	208 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CHSY1	Q86X52	802 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CDKL3	Q8IVW4	592 aa	Predicted RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	C12orf76	Q8N812	135 aa	Predicted RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CCHCR1	Q8TD31	782 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	MRPS31	Q92665	395 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CAVIN3	Q969G5	261 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	ZFR	Q96KR1	1074 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	QKI	Q96PU8	341 aa	Known RBP eCLIP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	SLC46A2	Q9BY10	475 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	SMG9	Q9H0W8	520 aa	Known RBP	10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	TLE6	Q9H808	572 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	PRDM16	Q9HAZ2	1276 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	ATP8A1	Q9Y2Q0	1164 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	CPQ	Q9Y646	472 aa		10.76	□□□□□ -0.69
NECAP1-223	ENST00000640091	GBF1	Q92538	1859 aa		10.75	□□□□□ -0.69
NECAP1-223	ENST00000640091	REV3L	O60673	3130 aa		10.75	□□□□□ -0.69
NECAP1-223	ENST00000640091	CCDC195	A0A1B0GUA6	201 aa		10.75	□□□□□ -0.69
NECAP1-223	ENST00000640091	TCRBV7S3A2	A0A539	114 aa		10.75	□□□□□ -0.69
NECAP1-223	ENST00000640091	DNALI1	O14645	258 aa	Predicted RBP	10.75	□□□□□ -0.69
NECAP1-223	ENST00000640091	ACSL4	O60488	711 aa		10.75	□□□□□ -0.69
NECAP1-223	ENST00000640091	CKM	P06732	381 aa		10.75	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms