RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 FAM114A2Q9NRY5 505 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 ERLIN1O75477 346 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 HDCP19113 662 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 SLC6A4P31645 630 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 PPP3CCP48454 512 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 SYDE1Q6ZW31 735 aaPredicted RBP20.71■□□□□ 0.91
CLN3-250ENST00000636839 TADA2BQ86TJ2 420 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 C12orf76Q8N812 135 aaPredicted RBP20.71■□□□□ 0.91
CLN3-250ENST00000636839 TBC1D31Q96DN5 1066 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 SMG9Q9H0W8 520 aaKnown RBP20.71■□□□□ 0.91
CLN3-250ENST00000636839 PRDM12Q9H4Q4 367 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 MYO9BQ13459 2157 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 NUP205Q92621 2012 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 HOXC13P31276 330 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 NRIP1P48552 1158 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 NUMBP49757 651 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 PABPC1LQ4VXU2 614 aaKnown RBP20.7■□□□□ 0.9
CLN3-250ENST00000636839 TFAP2DQ7Z6R9 452 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 CFAP52Q8N1V2 620 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 ELMOD1Q8N336 334 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 CCDC89Q8N998 374 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 ADAMTS19Q8TE59 1207 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 CEP41Q9BYV8 373 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 ASAH2Q9NR71 780 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 SLC12A6Q9UHW9 1150 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 MTCL1Q9Y4B5 1905 aaKnown RBP20.7■□□□□ 0.9
CLN3-250ENST00000636839 SASH3O75995 380 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 CORO1AP31146 461 aaKnown RBP20.7■□□□□ 0.9
CLN3-250ENST00000636839 TNNT3P45378 269 aaPredicted RBP20.7■□□□□ 0.9
CLN3-250ENST00000636839 ITGA8P53708 1063 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 SLC5A9Q2M3M2 681 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 SLC45A4Q5BKX6 768 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 FAM133BQ5BKY9 247 aaKnown RBP20.7■□□□□ 0.9
CLN3-250ENST00000636839 SYCP2LQ5T4T6 812 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 NUGGCQ68CJ6 796 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 ARHGAP36Q6ZRI8 547 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 CCNYQ8ND76 341 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 VN1R2Q8NFZ6 395 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 ART4Q93070 314 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 SLC46A2Q9BY10 475 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 TLE6Q9H808 572 aa20.7■□□□□ 0.9
CLN3-250ENST00000636839 BCLAF3A2AJT9 711 aaKnown RBP20.69■□□□□ 0.9
CLN3-250ENST00000636839 KPNA1P52294 538 aaPredicted RBP20.69■□□□□ 0.9
CLN3-250ENST00000636839 COG7P83436 770 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 AP1B1Q10567 949 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 CHSY1Q86X52 802 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 SHKBP1Q8TBC3 707 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 CCDC110Q8TBZ0 833 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 SNF8Q96H20 258 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 QKIQ96PU8 341 aaKnown RBP eCLIP20.69■□□□□ 0.9
CLN3-250ENST00000636839 PCDH9Q9HC56 1237 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 CPQQ9Y646 472 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 C5orf42Q9H799 3197 aa20.69■□□□□ 0.9
CLN3-250ENST00000636839 ATG2AQ2TAZ0 1938 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 OBSL1O75147 1896 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 MOSPD3O75425 235 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 HARS2P49590 506 aaKnown RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 SMAD3P84022 425 aaKnown RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 NRG1Q02297 640 aaPredicted RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 XRCC4Q13426 336 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 RAB30Q15771 203 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 IZUMO3Q5VZ72 239 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 POTEHQ6S545 545 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 NLRP14Q86W24 1093 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 TFB1MQ8WVM0 346 aaKnown RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 MRPS31Q92665 395 aaKnown RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 AGO1Q9UL18 857 aaKnown RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 CCDC195A0A1B0GUA6 201 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 ACSL4O60488 711 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 OLFM2O95897 454 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 RHOP08100 348 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 TACR2P21452 398 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 SGSHP51688 502 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 GAD2Q05329 585 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 GRASPQ7Z6J2 395 aaPredicted RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 ARHGAP12Q8IWW6 846 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 LGI2Q8N0V4 545 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 TSEN2Q8NCE0 465 aaKnown RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 ZNF707Q96C28 371 aaPredicted RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 RPRD1AQ96P16 312 aaPredicted RBP20.68■□□□□ 0.9
CLN3-250ENST00000636839 FUT8Q9BYC5 575 aa20.68■□□□□ 0.9
CLN3-250ENST00000636839 F5H423 210 aaPredicted RBP20.67■□□□□ 0.9
CLN3-250ENST00000636839 KCNK1O00180 336 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 GREM1O60565 184 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 STIP1P31948 543 aaKnown RBP20.67■□□□□ 0.9
CLN3-250ENST00000636839 ZNF135P52742 658 aaPredicted RBP20.67■□□□□ 0.9
CLN3-250ENST00000636839 PRKD1Q15139 912 aaPredicted RBP20.67■□□□□ 0.9
CLN3-250ENST00000636839 TEAD2Q15562 447 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 FAXCQ5TGI0 409 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 PDE12Q6L8Q7 609 aaKnown RBP20.67■□□□□ 0.9
CLN3-250ENST00000636839 CDKL3Q8IVW4 592 aaPredicted RBP20.67■□□□□ 0.9
CLN3-250ENST00000636839 TDHQ8IZJ6 230 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 P2RY11Q96G91 374 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 SLC39A8Q9C0K1 460 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 NOL6Q9H6R4 1146 aaKnown RBP20.67■□□□□ 0.9
CLN3-250ENST00000636839 DNAJC17Q9NVM6 304 aaKnown RBP20.67■□□□□ 0.9
CLN3-250ENST00000636839 SEPT10Q9P0V9 454 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 WHRNQ9P202 907 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 ANAPC5Q9UJX4 755 aa20.67■□□□□ 0.9
CLN3-250ENST00000636839 IGLV3-10A0A075B6K4 115 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms