RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 DOCK4Q8N1I0 1966 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 TBC1D3BA6NDS4 549 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 H0Y626 953 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 PJA2O43164 708 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 KAT7O95251 611 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 NAP1L1P55209 391 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 CCZ1BP86790 482 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 CCZ1P86791 482 aaPredicted RBP19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 BOLA3Q53S33 107 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 DAB2IPQ5VWQ8 1189 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 RNF43Q68DV7 783 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 FSTL4Q6MZW2 842 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 PSTKQ8IV42 348 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 FBXL6Q8N531 539 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 CCDC26Q8TAB7 109 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 IGSF8Q969P0 613 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 P2RY11Q96G91 374 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 PEBP4Q96S96 227 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 SNRNP25Q9BV90 132 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 DHX35Q9H5Z1 703 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 FBRSL1Q9HCM7 1045 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 SLC27A6Q9Y2P4 619 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 ADGRG1Q9Y653 693 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 ATG2BQ96BY7 2078 aa19.71■□□□□ 0.75
SQSTM1-216ENST00000626660 RCCD1A6NED2 376 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 DRGXA6NNA5 263 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 BTNL10A8MVZ5 291 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CLDN11O75508 207 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 LUC7L3O95232 432 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 L1CAMP32004 1257 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CLCN5P51795 746 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CDH4P55283 916 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CCDC173Q0VFZ6 552 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 C5orf22Q49AR2 442 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 FBXO43Q4G163 708 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CWF19L1Q69YN2 538 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 ASTLQ6HA08 431 aaPredicted RBP19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CHST9Q7L1S5 443 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CIR1Q86X95 450 aaPredicted RBP19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CCDC105Q8IYK2 499 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 CCAR2Q8N163 923 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 TERB1Q8NA31 727 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 FIBINQ8TAL6 211 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 TBC1D31Q96DN5 1066 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 ZYG11BQ9C0D3 744 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 ZWILCHQ9H900 591 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 LMAN1LQ9HAT1 526 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 GPATCH2LQ9NWQ4 482 aa19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 PPARGC1AQ9UBK2 798 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 MTF2Q9Y483 593 aaPredicted RBP19.7■□□□□ 0.74
SQSTM1-216ENST00000626660 IGLV3-10A0A075B6K4 115 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 CREB3O43889 395 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 LRIG2O94898 1065 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 EGFP01133 1207 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 CCDC175P0C221 793 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 CISD3P0C7P0 127 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 AOC1P19801 751 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 HTR7P34969 479 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 SLC1A1P43005 524 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 MAGEA9P43362 315 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 TNFRSF4P43489 277 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 OXCT1P55809 520 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 ZNF177Q13360 481 aaPredicted RBP19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 IFI16Q16666 785 aaKnown RBP19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 RWDD4Q6NW29 188 aaKnown RBP19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 ANKS1BQ7Z6G8 1248 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 ZNF683Q8IZ20 524 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 PYROXD2Q8N2H3 581 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 PHTF2Q8N3S3 785 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 SYNPOQ8N3V7 929 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 WFIKKN2Q8TEU8 576 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 TEKT4Q8WW24 435 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 TSGA10Q9BZW7 698 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 LACRTQ9GZZ8 138 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 ABCB8Q9NUT2 735 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 CLEC4EQ9ULY5 219 aa19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 MYO18AQ92614 2054 aaKnown RBP19.69■□□□□ 0.74
SQSTM1-216ENST00000626660 FAM72CH0Y354 149 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 TRIM24O15164 1050 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 BUB1O43683 1085 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 KRT7P08729 469 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 CHRNB1P11230 501 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 TCF4P15884 667 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 IL1R2P27930 398 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 GJC1P36383 396 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 IRAK1P51617 712 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 ZNF135P52742 658 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 SLC25A11Q02978 314 aaKnown RBP19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 CCINQ13939 588 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 SMTNL2Q2TAL5 461 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 FAM72AQ5TYM5 149 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 MANEALQ5VSG8 457 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 FAM72DQ6L9T8 149 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 C11orf63Q6NUN7 778 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 CYP4V2Q6ZWL3 525 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 FAM72BQ86X60 149 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 ZNF687Q8N1G0 1237 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 HSPH1Q92598 858 aa19.68■□□□□ 0.74
SQSTM1-216ENST00000626660 MAGEB5Q9BZ81 275 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms