RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 MRPL9Q9BYD2 267 aaKnown RBP17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 CRISPLD1Q9H336 500 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 FBXO44Q9H4M3 255 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 PIH1D1Q9NWS0 290 aaKnown RBP17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 MRPL42Q9Y6G3 142 aaKnown RBP17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 FNDC1Q4ZHG4 1894 aaPredicted RBP17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 FAM47DPA6NHR8 397 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 C1QAP02745 245 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 STX2P32856 288 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 GARSP41250 739 aaKnown RBP17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 RNF19BQ6ZMZ0 732 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 UNC5AQ6ZN44 842 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 ANKRD33Q7Z3H0 272 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 HDAC11Q96DB2 347 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 FCRL2Q96LA5 508 aaPredicted RBP17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 EBNA1BP2Q99848 306 aaKnown RBP17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 SENP1Q9P0U3 644 aa17.82■□□□□ 0.44
PCDHGC3-205ENST00000617641 MTMR11A4FU01 709 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 UPP2O95045 317 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 VNN2O95498 520 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 VIMP08670 466 aaKnown RBP17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 MX2P20592 715 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 SARNPP82979 210 aaKnown RBP17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 CDK16Q00536 496 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 TLE2Q04725 743 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 TRIM60Q495X7 471 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 MZB1Q8WU39 189 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 SLC44A1Q8WWI5 657 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 EIF2B3Q9NR50 452 aaKnown RBP17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 IGSF9Q9P2J2 1179 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 SHROOM3Q8TF72 1996 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 CRADDP78560 199 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 PPP2R5DQ14738 602 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 MGAT5BQ3V5L5 792 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 PRSS55Q6UWB4 352 aaPredicted RBP17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 SERPINB11Q96P15 392 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 SEPT5Q99719 369 aaPredicted RBP17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 TMEM175Q9BSA9 504 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 TMEM51Q9NW97 253 aa17.81■□□□□ 0.44
PCDHGC3-205ENST00000617641 CXorf49A8MYA2 514 aaPredicted RBP17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 PRPF4O43172 522 aaKnown RBP eCLIP17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 TBC1D4O60343 1298 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 APOEP02649 317 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 KRT4P19013 534 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 MNX1P50219 401 aaPredicted RBP17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 WDR4P57081 412 aaKnown RBP17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 ZBTB17Q13105 803 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 GPR17Q13304 367 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 SPARCL1Q14515 664 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 ARTNQ5T4W7 220 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 MANEALQ5VSG8 457 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 CTAGE3PQ8IX95 158 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 CKAP2Q8WWK9 683 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 FBXO32Q969P5 355 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 AGAP3Q96P47 875 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 GORASP1Q9BQQ3 440 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 BRD8Q9H0E9 1235 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 IL37Q9NZH6 218 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 IKBKGQ9Y6K9 419 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 KCNU1A8MYU2 1149 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 ANKRD65E5RJM6 399 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 ZBTB24O43167 697 aaPredicted RBP17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 FAM155BO75949 473 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 INHBAP08476 426 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 YWHAQP27348 245 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 SESN2P58004 480 aaPredicted RBP17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 ELAVL2Q12926 359 aaKnown RBP17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 OLIG2Q13516 323 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 MSANTD2Q6P1R3 559 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 LRRC8BQ6P9F7 803 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 TRMT10BQ6PF06 316 aaKnown RBP17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 LRRC43Q8N309 656 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 PPM1NQ8N819 430 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 SEC16BQ96JE7 1060 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 TTPALQ9BTX7 342 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 SMYD2Q9NRG4 433 aa17.8■□□□□ 0.44
PCDHGC3-205ENST00000617641 WDR27A2RRH5 827 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 TCP11X1B4DZS4 312 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 MLNP12872 115 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 PRKCHP24723 683 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 RPA3P35244 121 aaPredicted RBP17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 SF3A3Q12874 501 aaKnown RBP eCLIP17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 ARHGAP36Q6ZRI8 547 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 C14orf80Q86SX3 495 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 ARHGAP18Q8N392 663 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 DENND1AQ8TEH3 1009 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 TBC1D31Q96DN5 1066 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 KLF6Q99612 283 aaPredicted RBP17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 PAIP2Q9BPZ3 127 aaKnown RBP17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 SMG5Q9UPR3 1016 aaKnown RBP17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 PCDHA11Q9Y5I1 949 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 HS3ST4Q9Y661 456 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 MICAL3Q7RTP6 2002 aa17.79■□□□□ 0.44
PCDHGC3-205ENST00000617641 H7C4K7 107 aa17.78■□□□□ 0.44
PCDHGC3-205ENST00000617641 GOLGA8RI6L899 631 aa17.78■□□□□ 0.44
PCDHGC3-205ENST00000617641 DFFAO00273 331 aa17.78■□□□□ 0.44
PCDHGC3-205ENST00000617641 TRDMT1O14717 391 aaKnown RBP17.78■□□□□ 0.44
PCDHGC3-205ENST00000617641 TYROBPO43914 113 aa17.78■□□□□ 0.44
PCDHGC3-205ENST00000617641 TBX18O95935 607 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms